Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M3M39_RS07085 Genome accession   NZ_CP097118
Coordinates   1388812..1390194 (-) Length   460 a.a.
NCBI ID   WP_252797143.1    Uniprot ID   -
Organism   Fructilactobacillus hinvesii strain KI11_C11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1383812..1395194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M39_RS07060 (M3M39_07055) - 1383980..1384507 (-) 528 WP_252797138.1 NYN domain-containing protein -
  M3M39_RS07065 (M3M39_07060) rlmB 1384535..1385293 (-) 759 WP_252797139.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M3M39_RS07070 (M3M39_07065) - 1385283..1385708 (-) 426 WP_252797140.1 Mini-ribonuclease 3 -
  M3M39_RS07075 (M3M39_07070) cysS 1385717..1387126 (-) 1410 WP_252797141.1 cysteine--tRNA ligase -
  M3M39_RS07080 (M3M39_07075) gltX 1387240..1388733 (-) 1494 WP_252797142.1 glutamate--tRNA ligase -
  M3M39_RS07085 (M3M39_07080) radA 1388812..1390194 (-) 1383 WP_252797143.1 DNA repair protein RadA Machinery gene
  M3M39_RS07090 (M3M39_07085) - 1390210..1390746 (-) 537 WP_252797144.1 dUTP diphosphatase -
  M3M39_RS07095 (M3M39_07090) rpiA 1390892..1391587 (+) 696 WP_252797145.1 ribose-5-phosphate isomerase RpiA -
  M3M39_RS07100 (M3M39_07095) - 1391638..1392972 (+) 1335 WP_252797146.1 C1 family peptidase -
  M3M39_RS07105 (M3M39_07100) - 1393224..1393895 (-) 672 WP_252797147.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49601.71 Da        Isoelectric Point: 5.7712

>NTDB_id=687318 M3M39_RS07085 WP_252797143.1 1388812..1390194(-) (radA) [Fructilactobacillus hinvesii strain KI11_C11]
MSKTKTQFVCSNCGYISPTYLGRCPNCGEWNTFTEETVTKDSSASSPATRVSLAGKRVEPQLINEVDAHDAPRYQIQSAE
LNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLATMGKRVLYVTGEESADQVKMRADRLQIAANDRLYVFPETDMTA
VRNAIADLKPDVVIVDSVQTMQEGDVDSAIGSVSQVRGVTTDLMNIAKTNNITVFIVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHSYRLLRAVKNRFGSTNELGIFEMADGGLQEVQNPSEIFLEERLKNATGSAIVVAMEGTRPILVELQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLMLQNQDAYVKAAGGVKLNEPAIDLAMAVSIASSYENVSTDPRECYVGELG
LTGEVRRVDRIEQRIREAAKLGFSRIVVPKHSLEGFDVPDGIEVVGVTTLKEALKLALPK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=687318 M3M39_RS07085 WP_252797143.1 1388812..1390194(-) (radA) [Fructilactobacillus hinvesii strain KI11_C11]
ATGAGTAAAACCAAAACGCAGTTTGTTTGTTCCAACTGTGGGTACATTTCACCGACCTACCTTGGCCGGTGTCCTAACTG
TGGTGAATGGAACACGTTTACAGAAGAAACGGTCACAAAGGATAGCAGTGCGAGTTCGCCGGCCACCCGGGTTTCCTTAG
CGGGGAAGCGGGTGGAACCCCAGCTGATTAACGAAGTGGATGCTCATGATGCTCCCCGCTACCAGATTCAGTCGGCGGAA
TTAAACCGGGTGCTCGGGGGCGGCATTGTGCCGGGTTCTTTGGTGCTAATTGGTGGTGATCCTGGAATTGGGAAGTCAAC
TTTACTGCTTCAGGTTTCCGGGCAACTAGCCACCATGGGTAAGCGGGTTCTGTACGTGACCGGAGAAGAAAGTGCTGATC
AAGTTAAGATGCGGGCTGACCGCCTCCAGATTGCAGCCAACGACCGGCTCTACGTCTTTCCAGAAACCGATATGACGGCG
GTTCGAAACGCGATTGCTGATTTAAAGCCGGACGTCGTAATTGTTGACTCGGTCCAGACGATGCAGGAGGGCGACGTGGA
TTCTGCGATTGGCTCCGTTTCACAGGTCCGCGGCGTCACCACCGACCTCATGAACATTGCCAAAACCAATAACATTACGG
TCTTCATCGTCGGGCACGTGACCAAGGGCGGAGCAATCGCTGGTCCCAAGACTTTAGAGCACATGGTGGACACGGTGTTG
TACTTTGAAGGAGATAAGCACCACTCCTACCGCTTGCTCCGGGCGGTCAAAAATCGGTTTGGCTCGACCAACGAACTCGG
CATCTTTGAGATGGCGGACGGGGGCCTGCAAGAGGTGCAAAATCCGTCGGAGATTTTCCTAGAGGAACGACTGAAGAATG
CGACCGGATCAGCGATTGTGGTGGCAATGGAAGGAACCCGACCGATTCTGGTTGAACTGCAGGCGTTGATTACGCCCTCG
GTCTTTGGGAACGCACAGCGGACCGCCACTGGAGTTGATCGAAACCGGGTTTCGTTAATCATGGCCGTCTTAGAAAAACG
GGCCGGTCTGATGTTGCAAAACCAGGATGCTTACGTAAAAGCGGCTGGTGGGGTAAAGTTGAACGAACCTGCCATTGACC
TGGCGATGGCCGTCAGCATTGCCTCCAGTTATGAAAACGTCAGTACCGATCCACGGGAATGTTACGTCGGCGAACTCGGG
TTGACCGGGGAAGTCCGCCGGGTCGACCGGATTGAGCAACGAATCCGCGAAGCTGCCAAGCTTGGTTTCTCCCGGATTGT
GGTCCCTAAACACAGTTTGGAAGGTTTCGATGTTCCAGACGGGATTGAAGTGGTGGGTGTTACGACCCTTAAAGAAGCCT
TAAAGCTCGCTCTGCCGAAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-224)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.396

98.913

0.637
  radA Streptococcus pneumoniae D39

64.396

98.913

0.637
  radA Streptococcus pneumoniae R6

64.396

98.913

0.637
  radA Streptococcus pneumoniae TIGR4

64.396

98.913

0.637
  radA Streptococcus mitis NCTC 12261

64.396

98.913

0.637
  radA Streptococcus mitis SK321

64.396

98.913

0.637
  radA Bacillus subtilis subsp. subtilis str. 168

60.606

100

0.609