Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M3M39_RS06095 Genome accession   NZ_CP097118
Coordinates   1184452..1185696 (-) Length   414 a.a.
NCBI ID   WP_252796968.1    Uniprot ID   -
Organism   Fructilactobacillus hinvesii strain KI11_C11     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1179452..1190696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M39_RS06085 (M3M39_06080) - 1181866..1182675 (-) 810 WP_252796966.1 TIGR00282 family metallophosphoesterase -
  M3M39_RS06090 (M3M39_06085) rny 1182763..1184322 (-) 1560 WP_252796967.1 ribonuclease Y -
  M3M39_RS06095 (M3M39_06090) cinA 1184452..1185696 (-) 1245 WP_252796968.1 competence/damage-inducible protein A Machinery gene
  M3M39_RS06100 (M3M39_06095) pgsA 1185733..1186320 (-) 588 WP_252796969.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M3M39_RS06105 (M3M39_06100) - 1186380..1187285 (-) 906 WP_252796970.1 helix-turn-helix domain-containing protein -
  M3M39_RS06110 (M3M39_06105) yfmH 1187351..1188619 (-) 1269 WP_252796971.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  M3M39_RS06115 (M3M39_06110) yfmF 1188600..1189871 (-) 1272 WP_252796972.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44388.53 Da        Isoelectric Point: 5.6854

>NTDB_id=687314 M3M39_RS06095 WP_252796968.1 1184452..1185696(-) (cinA) [Fructilactobacillus hinvesii strain KI11_C11]
MKAEIISVGTELLLGEIVDTSSPFIAQHLANLGIDVYFEETVGDNPKRLANAIQTAAQRSDLVVLTGGLGPTEDDLTKTI
LAQVVGRSLVPEPKSMAKINAFYAQTDRPKPQHADLMGEIISGATVLPNEVGFAVGMLLATDQCTYLVLPGPPAELQPMF
EKEAEPRLAQLNHRQQIIRSRVMRFFGIGEPALEDRLHSLISGQQNPTLATYAKQNEVTLRITASGTDEQGVEQTLAETA
RKVNHLAGSYFYGNGDDNSLEQVVVALLKKRQLTITAAESLTSGLFQSTIANVDGASQIFAGGFVTYSATTKEQLVGVAK
ETISKHGVVSAETAIAMARGAKRRLQTDLAISFTGVAGPDSLEGHPAGFFWVGLALPDGQAITKKVQFAGTRNAVRDYAV
KTGLKLIYDQLQGQ

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=687314 M3M39_RS06095 WP_252796968.1 1184452..1185696(-) (cinA) [Fructilactobacillus hinvesii strain KI11_C11]
ATGAAAGCAGAAATCATTAGTGTCGGAACCGAGTTATTACTGGGAGAAATCGTGGACACCAGTTCACCTTTTATCGCGCA
ACACCTAGCCAACTTGGGGATTGATGTTTATTTTGAAGAAACGGTTGGAGATAATCCAAAACGCTTGGCGAATGCCATTC
AAACTGCTGCTCAGCGTAGTGACTTAGTGGTGCTGACTGGCGGGTTAGGACCGACTGAAGATGATTTAACGAAAACCATT
TTAGCGCAGGTTGTGGGACGGTCGTTGGTTCCAGAACCAAAATCGATGGCAAAGATTAACGCTTTTTATGCGCAAACCGA
TCGCCCAAAGCCCCAACACGCAGATTTAATGGGAGAAATAATTTCGGGGGCAACGGTTCTACCAAACGAGGTTGGGTTCG
CCGTGGGGATGTTACTTGCAACCGACCAGTGTACCTACTTGGTATTACCAGGACCACCGGCAGAATTACAACCAATGTTT
GAAAAGGAGGCTGAACCACGGTTAGCTCAACTGAATCATCGGCAGCAAATTATTCGATCCCGAGTGATGCGCTTCTTTGG
AATTGGGGAGCCGGCGTTAGAGGATCGGTTGCATTCGTTAATTTCTGGGCAACAGAATCCGACGTTAGCGACGTATGCGA
AGCAAAATGAGGTGACGCTACGGATCACAGCCAGTGGAACCGATGAGCAGGGCGTGGAACAAACGTTGGCTGAAACCGCA
CGGAAGGTTAACCATCTAGCAGGAAGTTATTTTTACGGCAATGGCGATGATAACTCATTAGAACAAGTGGTTGTTGCACT
CTTAAAAAAGCGGCAGTTAACGATTACTGCAGCCGAATCATTAACGAGTGGATTATTTCAAAGTACGATTGCAAACGTAG
ACGGGGCTTCTCAGATTTTTGCGGGTGGGTTTGTAACTTATTCTGCTACCACCAAGGAACAGTTAGTGGGAGTTGCCAAG
GAAACCATTTCTAAACATGGGGTGGTTTCTGCAGAAACAGCAATCGCAATGGCTCGGGGAGCGAAACGGCGGTTGCAAAC
CGATTTAGCGATTTCGTTTACCGGCGTGGCTGGGCCTGACTCATTAGAAGGACATCCGGCTGGTTTCTTCTGGGTGGGTT
TGGCTCTTCCCGATGGGCAAGCGATTACTAAAAAAGTTCAATTTGCTGGGACTAGAAATGCGGTCCGGGATTATGCCGTT
AAAACGGGACTCAAGCTGATTTATGATCAATTGCAAGGTCAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

47.847

100

0.483
  cinA Streptococcus mitis SK321

47.156

100

0.481
  cinA Streptococcus mitis NCTC 12261

45.735

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.952

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.466
  cinA Streptococcus pneumoniae R6

45.952

100

0.466
  cinA Streptococcus pneumoniae D39

45.952

100

0.466
  cinA Bacillus subtilis subsp. subtilis str. 168

43.309

99.275

0.43
  cinA Streptococcus suis isolate S10

39.426

92.512

0.365