Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M3M38_RS02820 Genome accession   NZ_CP097117
Coordinates   551821..553203 (-) Length   460 a.a.
NCBI ID   WP_252814710.1    Uniprot ID   -
Organism   Fructilactobacillus cliffordii strain KI11_D11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 546821..558203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M38_RS02795 (M3M38_02795) - 546981..547508 (-) 528 WP_252814705.1 NYN domain-containing protein -
  M3M38_RS02800 (M3M38_02800) rlmB 547537..548298 (-) 762 WP_252814706.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M3M38_RS02805 (M3M38_02805) - 548288..548713 (-) 426 WP_252814707.1 Mini-ribonuclease 3 -
  M3M38_RS02810 (M3M38_02810) cysS 548716..550131 (-) 1416 WP_252814708.1 cysteine--tRNA ligase -
  M3M38_RS02815 (M3M38_02815) gltX 550243..551736 (-) 1494 WP_252814709.1 glutamate--tRNA ligase -
  M3M38_RS02820 (M3M38_02820) radA 551821..553203 (-) 1383 WP_252814710.1 DNA repair protein RadA Machinery gene
  M3M38_RS02825 (M3M38_02825) - 553219..553755 (-) 537 WP_252814711.1 dUTP diphosphatase -
  M3M38_RS02830 (M3M38_02830) rpiA 553901..554587 (+) 687 WP_252814712.1 ribose-5-phosphate isomerase RpiA -
  M3M38_RS02835 (M3M38_02835) - 554639..555973 (+) 1335 WP_252814713.1 aminopeptidase C -
  M3M38_RS02840 (M3M38_02840) - 556097..556768 (-) 672 WP_252814714.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  M3M38_RS02845 (M3M38_02845) - 556939..558090 (+) 1152 WP_252814715.1 LCP family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49645.68 Da        Isoelectric Point: 5.1174

>NTDB_id=687286 M3M38_RS02820 WP_252814710.1 551821..553203(-) (radA) [Fructilactobacillus cliffordii strain KI11_D11]
MSKTKTQFVCSNCGYISPTYLGRCPNCGEWNTFTEETVTKDSGTNAKSTRVSLTGGRVEPQLINEVDAQDAPRYQIQSAE
LNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLATLGKRVLYVTGEESADQVKMRADRLQIAANDRLYVFPETDMTA
VRDAIANLKPDVVIVDSVQTMQEGDVDSAIGSVSQVRGVTTDLMNIAKTNNITVFIVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHSYRLLRAVKNRFGSTNELGIFEMADGGLQEVQNPSEIFLEERLKNATGSAIVVAMEGTRPILVELQALITPS
VFGNAQRTATGVDRNRISLIMAVLEKRAGLMLQNQDAYVKAAGGVKLNEPAIDLAMAVSIASSYENISTNPRECYVGELG
LTGEVRRVDRMEQRIREAAKLGFDRIVVPQHSLEGLDVPDGIEVIGVTTLEEALKLAIPK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=687286 M3M38_RS02820 WP_252814710.1 551821..553203(-) (radA) [Fructilactobacillus cliffordii strain KI11_D11]
ATGAGTAAAACAAAAACCCAGTTTGTCTGTTCTAACTGTGGTTACATTTCACCGACCTACCTGGGCCGGTGCCCCAATTG
TGGGGAATGGAATACGTTTACCGAAGAAACGGTCACAAAGGATAGTGGAACAAACGCCAAGTCGACTCGAGTGTCTTTGA
CGGGGGGGCGCGTAGAACCGCAACTGATTAACGAGGTTGACGCTCAAGACGCACCACGCTACCAGATTCAATCAGCCGAG
TTAAATCGGGTGCTCGGGGGCGGGATTGTGCCCGGATCCCTGGTTTTAATCGGGGGCGATCCCGGAATCGGGAAGTCGAC
CTTACTGCTCCAAGTTTCCGGTCAATTAGCCACACTCGGAAAACGGGTCTTGTACGTGACCGGAGAAGAAAGTGCGGATC
AGGTCAAGATGAGGGCGGATCGGTTGCAAATTGCGGCAAACGACCGTCTCTACGTCTTTCCAGAAACTGATATGACGGCG
GTGCGCGATGCGATTGCAAACCTAAAACCGGACGTCGTGATTGTTGACTCCGTTCAAACGATGCAGGAGGGCGACGTGGA
CTCCGCGATTGGCTCGGTCTCGCAGGTCCGGGGGGTAACGACCGACCTGATGAACATTGCGAAGACCAACAACATCACGG
TCTTTATCGTGGGCCACGTGACCAAGGGCGGTGCAATTGCCGGACCGAAAACCCTGGAACACATGGTGGATACGGTGCTG
TACTTTGAAGGTGACAAACACCACTCGTACCGTTTGTTACGGGCGGTCAAAAATCGGTTTGGCTCGACCAACGAACTCGG
CATCTTTGAGATGGCGGACGGGGGCCTGCAAGAGGTGCAAAATCCGTCGGAGATTTTCCTAGAGGAACGGCTGAAGAATG
CGACCGGATCAGCCATTGTGGTGGCGATGGAAGGAACCCGGCCGATTTTGGTGGAACTCCAGGCCCTGATTACGCCCTCG
GTCTTTGGGAACGCACAGCGAACCGCGACCGGAGTGGATCGGAACCGCATCTCGTTGATCATGGCAGTCCTAGAAAAGCG
AGCCGGCTTGATGCTGCAAAATCAAGATGCCTACGTCAAGGCCGCTGGGGGCGTGAAATTGAACGAACCCGCGATTGATC
TGGCGATGGCGGTCAGCATTGCCTCCAGTTACGAAAACATTAGTACCAATCCACGCGAGTGTTATGTTGGAGAGCTCGGC
CTGACCGGAGAAGTGCGGCGGGTCGATCGCATGGAACAACGAATTCGGGAGGCCGCTAAGTTGGGCTTTGACCGCATCGT
GGTTCCCCAACACAGCTTGGAAGGGCTTGACGTTCCTGATGGCATTGAAGTAATCGGAGTGACGACCCTTGAGGAAGCAC
TAAAGTTGGCCATTCCCAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-224)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.835

98.913

0.641
  radA Streptococcus pneumoniae D39

64.835

98.913

0.641
  radA Streptococcus pneumoniae R6

64.835

98.913

0.641
  radA Streptococcus pneumoniae TIGR4

64.835

98.913

0.641
  radA Streptococcus mitis NCTC 12261

64.835

98.913

0.641
  radA Streptococcus mitis SK321

64.835

98.913

0.641
  radA Bacillus subtilis subsp. subtilis str. 168

60.262

99.565

0.6