Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M3M35_RS06330 Genome accession   NZ_CP097116
Coordinates   1279250..1280632 (+) Length   460 a.a.
NCBI ID   WP_252749808.1    Uniprot ID   -
Organism   Fructilactobacillus myrtifloralis strain KI16_H9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1274250..1285632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M35_RS06305 (M3M35_06305) - 1274442..1275590 (-) 1149 WP_252749803.1 LCP family protein -
  M3M35_RS06310 (M3M35_06310) - 1275761..1276432 (+) 672 WP_252749804.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  M3M35_RS06315 (M3M35_06315) - 1276482..1277816 (-) 1335 WP_252749805.1 aminopeptidase C -
  M3M35_RS06320 (M3M35_06320) rpiA 1277867..1278553 (-) 687 WP_252749806.1 ribose-5-phosphate isomerase RpiA -
  M3M35_RS06325 (M3M35_06325) - 1278699..1279235 (+) 537 WP_252749807.1 dUTP diphosphatase -
  M3M35_RS06330 (M3M35_06330) radA 1279250..1280632 (+) 1383 WP_252749808.1 DNA repair protein RadA Machinery gene
  M3M35_RS06335 (M3M35_06335) gltX 1280714..1282207 (+) 1494 WP_252749809.1 glutamate--tRNA ligase -
  M3M35_RS06340 (M3M35_06340) cysS 1282316..1283728 (+) 1413 WP_252749810.1 cysteine--tRNA ligase -
  M3M35_RS06345 (M3M35_06345) - 1283734..1284159 (+) 426 WP_252749811.1 Mini-ribonuclease 3 -
  M3M35_RS06350 (M3M35_06350) rlmB 1284149..1284910 (+) 762 WP_252749812.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M3M35_RS06355 (M3M35_06355) - 1284934..1285458 (+) 525 WP_252749813.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49613.84 Da        Isoelectric Point: 6.4016

>NTDB_id=687277 M3M35_RS06330 WP_252749808.1 1279250..1280632(+) (radA) [Fructilactobacillus myrtifloralis strain KI16_H9]
MSKTTTQFVCTNCGYISPSYLGRCPNCGEWNTFTEETKAKSDPASGAKTRVSLHGNRVTPQLITEVDAQDAPRYQIQSAE
LNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLAMLGKRVLYVTGEESADQVKMRADRLHITTNERVYVFPETDMTA
VRDAIADLKPDVVIVDSVQTMQEGDVDSAIGSVSQVRGVTTDLMGIAKTNNITVFIVGHVTKGGALAGPKTLEHMVDTVL
YFEGDKHHSYRLLRAVKNRFGSTNELGIFEMADQGLQEVQNPSEIFLEERLKNATGSAIVVAMEGTRPILVELQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLLLQNQDAYVKAAGGVKLNEPALDLAMAVSIASSYENISTNPRECYVGELG
LTGEVRRVDRIEQRIREAAKLGFARILVPKHSLEGLTVPTGIEVVGVTTLKEALQLALPK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=687277 M3M35_RS06330 WP_252749808.1 1279250..1280632(+) (radA) [Fructilactobacillus myrtifloralis strain KI16_H9]
ATGAGTAAAACCACCACTCAATTTGTGTGTACAAACTGTGGGTACATTTCTCCCAGTTACTTAGGTCGTTGTCCTAACTG
TGGGGAGTGGAATACGTTTACAGAAGAAACAAAGGCCAAGTCCGACCCAGCTAGTGGAGCAAAGACCCGGGTTTCTCTGC
ACGGCAACCGGGTGACGCCACAACTGATTACCGAGGTAGATGCCCAGGATGCGCCCCGCTATCAGATTCAATCCGCAGAG
CTAAACCGGGTTCTCGGGGGTGGAATTGTGCCGGGTTCCCTTGTTTTAATTGGGGGCGATCCCGGCATTGGCAAGTCGAC
CTTACTCCTGCAAGTGTCTGGTCAGTTAGCGATGCTCGGCAAACGGGTGTTGTACGTGACTGGAGAAGAAAGTGCGGACC
AGGTGAAAATGCGTGCTGACCGCTTGCACATCACCACGAACGAGCGGGTATATGTCTTTCCAGAAACCGACATGACGGCG
GTTCGGGATGCCATTGCTGATTTAAAGCCGGACGTTGTCATCGTGGATTCGGTCCAAACCATGCAGGAGGGCGACGTTGA
CTCAGCGATTGGGTCGGTCTCACAGGTTCGGGGGGTCACCACTGACTTGATGGGGATTGCAAAGACCAATAACATCACCG
TCTTTATCGTGGGGCACGTCACCAAAGGCGGTGCGCTCGCGGGGCCAAAAACCCTGGAACACATGGTAGATACGGTGCTC
TATTTTGAAGGCGATAAGCACCATTCGTACCGTCTGTTGCGGGCGGTTAAGAACCGGTTTGGGTCAACCAACGAACTCGG
CATTTTTGAAATGGCCGATCAGGGATTGCAAGAGGTGCAAAACCCCTCAGAAATTTTTCTGGAGGAACGGTTGAAAAATG
CAACCGGTTCGGCCATTGTGGTGGCCATGGAAGGAACTCGGCCCATTTTGGTTGAACTCCAGGCCCTCATCACGCCGTCA
GTCTTTGGGAACGCCCAACGAACGGCGACCGGTGTGGATCGCAACCGGGTGTCGTTGATCATGGCCGTGTTAGAAAAACG
GGCTGGATTACTCCTTCAAAATCAGGATGCCTACGTTAAGGCAGCGGGCGGGGTGAAGTTAAATGAACCCGCACTCGACC
TAGCCATGGCCGTCAGCATTGCTTCCAGTTATGAAAATATCAGTACGAACCCGCGTGAGTGTTACGTTGGTGAACTGGGG
TTGACCGGAGAAGTCCGCCGGGTTGACCGGATCGAACAACGGATTCGCGAAGCCGCCAAACTGGGCTTTGCCCGGATTTT
GGTGCCGAAGCATAGCCTGGAAGGGCTCACCGTGCCGACCGGAATTGAAGTGGTCGGAGTTACCACCCTCAAAGAGGCGT
TGCAACTGGCCCTTCCCAAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.615

98.913

0.639
  radA Streptococcus pneumoniae D39

64.615

98.913

0.639
  radA Streptococcus pneumoniae R6

64.615

98.913

0.639
  radA Streptococcus pneumoniae TIGR4

64.615

98.913

0.639
  radA Streptococcus mitis NCTC 12261

64.615

98.913

0.639
  radA Streptococcus mitis SK321

64.615

98.913

0.639
  radA Bacillus subtilis subsp. subtilis str. 168

60.699

99.565

0.604