Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M3M50_RS26460 Genome accession   NZ_CP097108
Coordinates   5971803..5973170 (-) Length   455 a.a.
NCBI ID   WP_030140305.1    Uniprot ID   A0A0B1YXD7
Organism   Pseudomonas bijieensis strain SP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5966803..5978170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M50_RS26435 (M3M50_26435) - 5967033..5967710 (+) 678 WP_162893924.1 GntR family transcriptional regulator -
  M3M50_RS26440 (M3M50_26440) yjiA 5967702..5968673 (-) 972 WP_212801476.1 GTPase -
  M3M50_RS26445 (M3M50_26445) - 5968870..5969067 (-) 198 WP_003201656.1 YbdD/YjiX family protein -
  M3M50_RS26450 (M3M50_26450) - 5969081..5971147 (-) 2067 WP_116833495.1 carbon starvation CstA family protein -
  M3M50_RS26455 (M3M50_26455) - 5971306..5971662 (+) 357 WP_109756220.1 PilZ domain-containing protein -
  M3M50_RS26460 (M3M50_26460) radA 5971803..5973170 (-) 1368 WP_030140305.1 DNA repair protein RadA Machinery gene
  M3M50_RS26465 (M3M50_26465) - 5973213..5973761 (-) 549 WP_109756327.1 ankyrin repeat domain-containing protein -
  M3M50_RS26470 (M3M50_26470) katB 5973899..5975440 (-) 1542 WP_249015571.1 catalase KatB -
  M3M50_RS26475 (M3M50_26475) mscL 5975723..5976136 (+) 414 WP_072411386.1 large-conductance mechanosensitive channel protein MscL -
  M3M50_RS26480 (M3M50_26480) - 5976179..5976955 (-) 777 WP_109756222.1 ferredoxin--NADP reductase -
  M3M50_RS26485 (M3M50_26485) - 5977221..5977961 (+) 741 WP_249015572.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48774.24 Da        Isoelectric Point: 6.8987

>NTDB_id=687116 M3M50_RS26460 WP_030140305.1 5971803..5973170(-) (radA) [Pseudomonas bijieensis strain SP1]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=687116 M3M50_RS26460 WP_030140305.1 5971803..5973170(-) (radA) [Pseudomonas bijieensis strain SP1]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAGTGCAGCGAGTG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAGAGCGGCGGAGCGGCGGCGCCCACCGGTCGCACTGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATTCCACGTTTCTCCACCGCGTCCGGTGAACTG
GACCGCGTACTGGGCGGTGGCCTGGTAGACGGTTCGGTGGTGCTGATCGGCGGTGATCCGGGTATCGGCAAATCCACCAT
CCTGTTGCAAACCTTGTGCAACCTTGCCACCCGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCCCAACAGCAGGTCG
CCATGCGCGCCAGGCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAGACCTGCATCGAAACCATCATCGCC
ACGGCACGCCTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCCCC
CGGCGGCGTGTCCCAGGTGCGCGAAAGCGCGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGTGCGTTGGCGGGGCCACGGGTGCTGGAGCACATGGTCGATACGGTTTTGTATTTCGAG
GGCGAATCCGATGGTCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTCGGTGCCGTCAACGAACTGGGTGTGTTCGG
CATGACCGACCGGGGCCTGAAAGAAGTCTCGAACCCTTCGGCGATCTTTCTGACACGAGCCCAGGAAGAAGTCCCCGGCA
GTGTGGTCATGGCAACGTGGGAAGGGACTCGCCCGATGCTGGTGGAAGTGCAGGCGCTGGTGGACGACAGCCATTTGGCG
AACCCGCGCCGGGTCACCCTGGGCCTGGATCAGAACCGGCTGGCCATGCTGCTGGCGGTGTTGCATCGACACGGTGGGAT
TCCGACTCATGACCAGGACGTGTTCCTCAACGTCGTGGGTGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTCATGTCCAGTCTGCGCAACCGGCCGCTGCCCCACGATCTGTTGGTGTTCGGCGAAGTGGGGCTGTCAGGC
GAAGTGCGGCCGGTGCCCAGTGGGCAGGAGCGGCTCAAGGAGGCGGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCGGCGGGGTTGCAGATCATTGCCGTGACACGCCTGGAACAGGCGTTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YXD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464