Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M3L74_RS15190 Genome accession   NZ_CP097107
Coordinates   2971118..2971732 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain GMU8049     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2966118..2976732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3L74_RS15175 (M3L74_15175) helD 2966342..2968396 (-) 2055 WP_088902478.1 DNA helicase IV -
  M3L74_RS15180 (M3L74_15180) - 2968522..2968968 (+) 447 WP_088902479.1 YccF domain-containing protein -
  M3L74_RS15185 (M3L74_15185) yccS 2968987..2971140 (+) 2154 WP_032939270.1 YccS family putative transporter -
  M3L74_RS15190 (M3L74_15190) sxy/tfoX 2971118..2971732 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  M3L74_RS15195 (M3L74_15195) sulA 2971950..2972459 (+) 510 WP_088902480.1 SOS-induced cell division inhibitor SulA -
  M3L74_RS15200 (M3L74_15200) ompA 2972817..2973875 (+) 1059 WP_088902481.1 porin OmpA -
  M3L74_RS15205 (M3L74_15205) matP 2973965..2974417 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  M3L74_RS15210 (M3L74_15210) - 2974603..2976363 (+) 1761 WP_249018250.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=687084 M3L74_RS15190 WP_003035889.1 2971118..2971732(-) (sxy/tfoX) [Citrobacter freundii strain GMU8049]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=687084 M3L74_RS15190 WP_003035889.1 2971118..2971732(-) (sxy/tfoX) [Citrobacter freundii strain GMU8049]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686