Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   N7925_RS07550 Genome accession   NZ_CP112880
Coordinates   1747846..1748643 (+) Length   265 a.a.
NCBI ID   WP_265598931.1    Uniprot ID   -
Organism   Streptomyces sp. CA-278952     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742846..1753643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7925_RS07535 (N7925_07540) - 1743068..1743604 (+) 537 WP_274343427.1 TerD family protein -
  N7925_RS07540 (N7925_07545) - 1743772..1746669 (-) 2898 WP_265598929.1 vitamin B12-dependent ribonucleotide reductase -
  N7925_RS07545 (N7925_07550) nrdR 1746844..1747356 (-) 513 WP_265598930.1 transcriptional regulator NrdR -
  N7925_RS07550 (N7925_07555) dinR/lexA 1747846..1748643 (+) 798 WP_265598931.1 transcriptional repressor LexA Regulator
  N7925_RS07555 (N7925_07560) - 1748832..1750802 (-) 1971 WP_274343428.1 ATP-dependent DNA helicase -
  N7925_RS07560 (N7925_07565) - 1750841..1752748 (-) 1908 WP_274343429.1 IucA/IucC family siderophore biosynthesis protein -
  N7925_RS07565 (N7925_07570) - 1752809..1753630 (-) 822 WP_265598934.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28795.54 Da        Isoelectric Point: 7.4761

>NTDB_id=687077 N7925_RS07550 WP_265598931.1 1747846..1748643(+) (dinR/lexA) [Streptomyces sp. CA-278952]
MTTTADSATITARDHRSQSRLEPVHAMNDTVTNTDGPEPARTGRSMPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=687077 N7925_RS07550 WP_265598931.1 1747846..1748643(+) (dinR/lexA) [Streptomyces sp. CA-278952]
GTGACCACGACCGCAGACAGTGCCACCATCACCGCCCGGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACACAGTCACGAACACGGACGGGCCCGAGCCCGCACGCACGGGACGTTCCATGCCCGGCAGGCCCCCCGGCATCC
GGGCGGACAGCTCGGGGCTCACGGACCGGCAACGGCGGGTCATCGAGGTCATCCGCGACTCCGTGCAGCGGCGGGGGTAC
CCGCCCTCCATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCGCTGGA
GCGCAAGGGCTTCCTCCGCCGGGACCCGCACCGGCCCCGCGCCTACGAGGTGCGCGGATCGGACCAGCCCAGCACCCAGC
CGACCGACACGACGGGCAAGCCCGCCGCGTCCTACGTACCGCTGGTGGGCCGGATCGCCGCCGGTGGACCGATCCTCGCG
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGTGAGCTCTTCGTCCTGAAGGTCGTCGG
CGACTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGGGACA
TCGTCGCCGCCATGCTCGACGGCGAGGCGACGGTCAAGCGCTTCCGCCGGGAGGACGGTCACGTGTGGCTGCTCCCTCAC
AACGCCGCGTACCAGCCGATCCCCGGCGACGAGGCCACCATCCTGGGCAAGGTGGTGGCGGTGCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37