Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   N7925_RS03305 Genome accession   NZ_CP112880
Coordinates   780508..781530 (+) Length   340 a.a.
NCBI ID   WP_331618192.1    Uniprot ID   -
Organism   Streptomyces sp. CA-278952     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 775508..786530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7925_RS03280 (N7925_03280) - 775979..776851 (+) 873 WP_274342968.1 sugar phosphate isomerase/epimerase -
  N7925_RS03285 (N7925_03285) - 776986..777399 (+) 414 WP_265598005.1 hypothetical protein -
  N7925_RS03290 (N7925_03290) - 777512..778342 (-) 831 WP_265598006.1 ABC transporter ATP-binding protein -
  N7925_RS03295 (N7925_03295) - 778339..779361 (-) 1023 WP_274342969.1 ABC transporter substrate-binding protein -
  N7925_RS03300 (N7925_03300) - 779388..780251 (-) 864 WP_265598008.1 ABC transporter permease -
  N7925_RS03305 (N7925_03305) cytR 780508..781530 (+) 1023 WP_331618192.1 LacI family DNA-binding transcriptional regulator Regulator
  N7925_RS03310 (N7925_03310) - 781555..782139 (-) 585 WP_274342971.1 GAF domain-containing protein -
  N7925_RS03315 (N7925_03315) - 782136..782759 (-) 624 WP_265598011.1 ATP/GTP-binding protein -
  N7925_RS03320 (N7925_03320) - 782737..783108 (-) 372 WP_006128964.1 DUF742 domain-containing protein -
  N7925_RS03325 (N7925_03325) - 783111..783545 (-) 435 WP_274342972.1 roadblock/LC7 domain-containing protein -
  N7925_RS03330 (N7925_03330) - 783542..785722 (-) 2181 WP_274342973.1 ATP-binding protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 35668.82 Da        Isoelectric Point: 9.1366

>NTDB_id=687066 N7925_RS03305 WP_331618192.1 780508..781530(+) (cytR) [Streptomyces sp. CA-278952]
MTLDAVAREAGVSLATASRALNGTTRVRDDLRERVRAAADLLGYIPNAHAQALASPEGNRTVGLICHDVGDPYFAGIASG
VMRAAADQDLLVMLASTFREPAREIAYVSMLRAQRARAILLIGSGFQDRAWERAMDAELEPYVRAGGRVAVVSRHRSLRV
DTVQPENRAGAAALAASLVALGHREFAVLSGPGELTTVADRLAGFREGLARAGITLERVVRGAFTREGGHAAARQLLASG
GSRPTCVFAVTDVMAVGALAALREAGVRVPEDMSLAGFDDIPVVREVSPPLTTVALPLTEMGEQVIALALRTPSATGRSR
VLRIEGNVVLRGSTGAPPGS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=687066 N7925_RS03305 WP_331618192.1 780508..781530(+) (cytR) [Streptomyces sp. CA-278952]
GTGACGCTCGACGCGGTGGCGCGCGAGGCGGGCGTCTCGCTCGCCACCGCGTCCCGGGCGCTGAACGGCACCACCCGGGT
CCGCGACGACCTGCGGGAGCGGGTCCGCGCGGCGGCCGATCTCCTCGGCTACATCCCCAACGCCCACGCCCAGGCCCTCG
CCAGCCCCGAGGGCAACCGTACGGTTGGGCTGATCTGCCACGACGTCGGCGACCCCTACTTCGCGGGCATCGCCAGTGGA
GTGATGCGCGCGGCCGCCGATCAGGACCTGCTGGTGATGCTGGCCTCCACCTTCCGCGAACCCGCCCGGGAGATCGCGTA
CGTCTCGATGCTGCGCGCCCAGCGGGCCCGGGCCATCCTGCTGATCGGCTCCGGCTTCCAGGACCGGGCCTGGGAGCGGG
CGATGGACGCGGAGCTGGAGCCGTACGTCCGGGCGGGCGGGCGGGTCGCGGTGGTCAGCCGGCACCGGAGCTTGCGGGTG
GACACCGTGCAGCCGGAGAACCGGGCCGGGGCGGCGGCGCTCGCGGCCTCGCTGGTGGCGCTGGGGCACCGGGAGTTCGC
GGTGCTGAGCGGGCCTGGCGAACTGACCACGGTGGCCGACCGGTTGGCAGGGTTTCGCGAGGGGCTCGCGAGGGCGGGCA
TCACCCTGGAGCGGGTGGTGCGGGGCGCGTTCACCCGGGAGGGCGGACACGCGGCGGCACGACAGCTGCTGGCCTCCGGG
GGCTCGCGGCCGACCTGCGTGTTCGCGGTGACCGACGTGATGGCCGTCGGCGCGCTCGCCGCGCTGCGGGAGGCCGGCGT
ACGCGTCCCGGAGGACATGTCGCTCGCGGGGTTCGACGACATCCCCGTCGTACGCGAGGTGTCGCCGCCGCTGACCACGG
TGGCGCTGCCGCTCACGGAGATGGGCGAGCAGGTGATCGCCCTCGCGTTGCGGACACCGTCGGCGACGGGGCGTTCCCGG
GTGCTGCGGATCGAGGGGAACGTGGTCCTGCGGGGCAGCACCGGCGCTCCGCCCGGGAGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-47)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.549

100

0.362