Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M2J80_RS21370 Genome accession   NZ_CP097103
Coordinates   4683395..4684765 (-) Length   456 a.a.
NCBI ID   WP_009681282.1    Uniprot ID   A0A7W2JQ30
Organism   Pseudomonas sp. NY11382     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4678395..4689765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J80_RS21355 (M2J80_21340) - 4678484..4680550 (-) 2067 WP_270148148.1 carbon starvation CstA family protein -
  M2J80_RS21360 (M2J80_21345) - 4680717..4681082 (+) 366 WP_110679690.1 PilZ domain-containing protein -
  M2J80_RS21365 (M2J80_21350) - 4681343..4682863 (+) 1521 WP_054906235.1 nucleobase:cation symporter-2 family protein -
  M2J80_RS21370 (M2J80_21355) radA 4683395..4684765 (-) 1371 WP_009681282.1 DNA repair protein RadA Machinery gene
  M2J80_RS21375 (M2J80_21360) mscL 4684942..4685361 (+) 420 WP_029888025.1 large-conductance mechanosensitive channel protein MscL -
  M2J80_RS21380 (M2J80_21365) - 4685433..4686209 (-) 777 WP_110679786.1 ferredoxin--NADP reductase -
  M2J80_RS21385 (M2J80_21370) - 4686422..4687129 (+) 708 WP_110679785.1 autoinducer binding domain-containing protein -
  M2J80_RS21390 (M2J80_21375) - 4687226..4688350 (+) 1125 WP_110679784.1 methyltransferase -
  M2J80_RS21395 (M2J80_21380) - 4688799..4688954 (-) 156 WP_009682264.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48785.29 Da        Isoelectric Point: 7.1315

>NTDB_id=687062 M2J80_RS21370 WP_009681282.1 4683395..4684765(-) (radA) [Pseudomonas sp. NY11382]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDKLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=687062 M2J80_RS21370 WP_009681282.1 4683395..4684765(-) (radA) [Pseudomonas sp. NY11382]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGTGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGCGGTGCCGCTGCGCCCAGCAGTGGCCGCGCCGGTTGGA
CCGGGCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATCCCCCGTTTCACCACCAGCAGCACCGAG
CTCGACCGTGTGTTGGGTGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATTGGTGGCGACCCCGGCATCGGCAAGTCGAC
CATCCTGTTGCAGACCCTGTGCAACATCGCCGTGGGCATGCCGGCACTGTATGTCACTGGCGAGGAATCGCAGCAACAGG
TGGCCATGCGCTCGCGCCGCCTGGGCCTGCCCCAGGACAAGCTCAAGGTCATGACCGAAACCTGCATCGAGACGATCATT
GCCACGGCACGTGTCGAAAAACCGCGGGTAATGGTGATCGACTCCATCCAGACCATCTTCACCGAGCAGTTGCAGTCAGC
CCCTGGTGGCGTTGCCCAGGTGCGTGAAAGCACGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCCATCTTCC
TGGTCGGCCATGTCACCAAGGAGGGCTCGCTGGCCGGCCCGCGGGTGCTGGAGCACATGGTCGATACCGTGTTGTATTTC
GAGGGCGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTT
CGGCATGACCGACCGCGGCTTGAAGGAGGTCTCCAACCCGTCTGCGATCTTCCTCAACCGTACCCAGGAGGAAGTGCCGG
GCAGCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCCATGCTGGTCGAGGTGCAGGCGCTGGTGGACGACAGCCACCTG
GCCAACCCGCGCCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTACTGCACCGCCACGGCGG
TATACCCACCCACGACCAGGACGTGTTCCTCAATGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCTTCGGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCACTGGCCCATGGCCTGCTGGTGTTCGGCGAGATCGGCTTGTCG
GGCGAGGTACGCCCGGTGCCAAGCGGGCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGGGCGATCGTGCC
CAAGGGCAATGCGCCGAAGGAGCCGCCAGCGGGGCTGCAGGTCATTGCCGTGACCCGGCTGGAGCAGGCACTGGATGCAT
TGTTCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2JQ30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461