Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M2901_RS03690 Genome accession   NZ_CP097072
Coordinates   761631..763001 (-) Length   456 a.a.
NCBI ID   WP_248848525.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 756631..768001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2901_RS03670 (M2901_03670) cysS 756706..758124 (-) 1419 WP_248856152.1 cysteine--tRNA ligase -
  M2901_RS03675 (M2901_03675) epsC 758108..758665 (-) 558 WP_126762361.1 serine O-acetyltransferase EpsC -
  M2901_RS03680 (M2901_03680) gltX 758920..760386 (-) 1467 WP_023607066.1 glutamate--tRNA ligase -
  M2901_RS03685 (M2901_03685) - 760482..761612 (-) 1131 WP_126762357.1 PIN/TRAM domain-containing protein -
  M2901_RS03690 (M2901_03690) radA 761631..763001 (-) 1371 WP_248848525.1 DNA repair protein RadA Machinery gene
  M2901_RS03695 (M2901_03695) - 763106..763639 (-) 534 WP_248856153.1 dUTP diphosphatase -
  M2901_RS03700 (M2901_03700) - 763755..764012 (-) 258 WP_126762350.1 metal-sensing transcriptional repressor -
  M2901_RS03705 (M2901_03705) - 764027..765673 (-) 1647 WP_248856154.1 FAD-dependent oxidoreductase -
  M2901_RS03710 (M2901_03710) - 765674..765988 (-) 315 WP_023607060.1 rhodanese-like domain-containing protein -
  M2901_RS03715 (M2901_03715) - 766102..766821 (-) 720 WP_248856155.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50102.55 Da        Isoelectric Point: 6.1967

>NTDB_id=686926 M2901_RS03690 WP_248848525.1 761631..763001(-) (radA) [Vagococcus lutrae strain AT03]
MAKKQRTQFECQACGYISPKYLGRCPNCGAWNEMMEVKIQEEPDRHSRVSLAGKRTTAKRLTEVAMEKEPRVKTQMDELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLNQADGVVLYVSGEESAEQIKMRAERLGIKGNDFYIYPETDMSQIRQ
TIEDLQPDYVIIDSIQTMMQPEIASASGSVSQVRETTAELMQIAKTNHIAIFIVGHVTKEGALAGPRMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMVESGLQEVLNPSEVFLEERLDGATGSAIVVSMEGSRPILAEVQALVSPTLFG
NAKRTATGLDYNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAMSIASSYKDTGTSATECFIGEIGLTG
EVRRVNRIDQRIREAQKLGFKKVYVPKNNLHGYTPPADIEVVGIATLSEALRKVFP

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=686926 M2901_RS03690 WP_248848525.1 761631..763001(-) (radA) [Vagococcus lutrae strain AT03]
GTGGCGAAAAAGCAACGTACACAATTTGAATGTCAAGCATGCGGTTACATTTCTCCTAAATATTTAGGTAGATGCCCTAA
CTGCGGTGCTTGGAATGAAATGATGGAAGTGAAGATACAAGAAGAACCTGACCGTCATAGTCGCGTCAGCCTAGCTGGCA
AGCGAACAACGGCTAAGCGATTAACAGAAGTGGCGATGGAAAAAGAGCCCCGTGTAAAAACACAAATGGACGAGCTTAAT
CGTGTGTTGGGTGGTGGCGTTGTTCCCGGGTCACTTGTTTTAATTGGTGGAGACCCAGGAATTGGGAAATCTACGTTGTT
ACTACAAGTTTCGCAACAGCTTAATCAAGCTGATGGCGTAGTTTTATACGTGTCTGGTGAGGAAAGTGCCGAGCAGATAA
AAATGCGTGCGGAGCGTTTAGGGATTAAAGGCAATGATTTTTATATTTATCCCGAAACAGATATGTCTCAAATACGTCAA
ACTATCGAAGACTTACAACCAGACTATGTCATCATTGATTCCATCCAGACGATGATGCAACCGGAGATAGCCAGTGCATC
AGGTAGTGTGAGCCAAGTCCGAGAAACGACTGCTGAATTGATGCAAATCGCTAAAACTAATCATATTGCTATTTTTATCG
TAGGCCATGTGACAAAGGAAGGCGCCTTAGCAGGTCCTAGAATGTTAGAACATATGGTAGATACGGTGTTGTATTTTGAA
GGGGATCGTCATCATACCTTTCGAATTTTGCGAGCGGTAAAAAACCGTTTTGGATCAACAAATGAGATTGGCATATTTGA
GATGGTGGAGTCGGGATTACAGGAAGTCTTAAATCCTTCTGAAGTCTTCTTAGAAGAGCGATTAGACGGTGCGACTGGCT
CGGCGATTGTGGTGTCGATGGAAGGAAGTCGTCCGATTTTAGCAGAAGTTCAAGCTCTTGTATCTCCTACTTTATTTGGA
AACGCAAAGCGGACAGCGACTGGGTTAGATTATAACCGGGTGTCACTGATTATGGCAGTGTTAGAAAAACGAGCCGGTCT
TTTGTTGCAAAATCAAGATGCGTATTTAAAAGCTGCTGGTGGTGTTAAGCTAGATGAACCGGCGATTGACTTAGCCATTG
CGATGAGTATCGCTTCGAGCTACAAAGATACGGGAACTAGTGCTACCGAGTGTTTTATTGGCGAAATTGGTTTGACCGGT
GAAGTGCGACGGGTGAATCGGATTGATCAACGCATTAGAGAAGCTCAAAAGTTAGGCTTTAAAAAAGTGTACGTACCAAA
AAACAATTTACATGGTTATACACCGCCAGCTGATATTGAAGTGGTTGGAATTGCCACCTTATCAGAAGCGTTAAGAAAAG
TTTTTCCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(71-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.066

99.781

0.739
  radA Streptococcus mitis SK321

74.066

99.781

0.739
  radA Streptococcus pneumoniae Rx1

73.846

99.781

0.737
  radA Streptococcus pneumoniae D39

73.846

99.781

0.737
  radA Streptococcus pneumoniae R6

73.846

99.781

0.737
  radA Streptococcus pneumoniae TIGR4

73.846

99.781

0.737
  radA Bacillus subtilis subsp. subtilis str. 168

65.929

99.123

0.654