Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M2901_RS03570 Genome accession   NZ_CP097072
Coordinates   737317..739128 (-) Length   603 a.a.
NCBI ID   WP_126762410.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT03     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 732317..744128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2901_RS03530 (M2901_03530) rplT 732654..733013 (-) 360 WP_023605496.1 50S ribosomal protein L20 -
  M2901_RS03535 (M2901_03535) rpmI 733059..733259 (-) 201 WP_023605495.1 50S ribosomal protein L35 -
  M2901_RS03540 (M2901_03540) infC 733286..733807 (-) 522 WP_023605494.1 translation initiation factor IF-3 -
  M2901_RS03545 (M2901_03545) - 734078..734791 (+) 714 WP_248856134.1 uracil-DNA glycosylase -
  M2901_RS03550 (M2901_03550) - 734820..735329 (-) 510 WP_248856135.1 gamma carbonic anhydrase family protein -
  M2901_RS03555 (M2901_03555) - 735358..735534 (-) 177 WP_248856136.1 hypothetical protein -
  M2901_RS03560 (M2901_03560) - 735535..736215 (-) 681 WP_248856137.1 NAD(P)H-dependent oxidoreductase -
  M2901_RS03565 (M2901_03565) - 736241..737260 (-) 1020 WP_248856138.1 zinc-binding alcohol dehydrogenase family protein -
  M2901_RS03570 (M2901_03570) pepF 737317..739128 (-) 1812 WP_126762410.1 oligoendopeptidase F Regulator
  M2901_RS03575 (M2901_03575) - 739175..740368 (-) 1194 WP_248856139.1 competence protein CoiA family protein -
  M2901_RS03580 (M2901_03580) - 740448..741716 (-) 1269 WP_248856140.1 NCS2 family permease -
  M2901_RS03585 (M2901_03585) - 741889..743289 (-) 1401 WP_248856141.1 helix-turn-helix domain-containing protein -
  M2901_RS03590 (M2901_03590) udk 743450..744085 (-) 636 WP_023607084.1 uridine kinase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68976.63 Da        Isoelectric Point: 4.7738

>NTDB_id=686925 M2901_RS03570 WP_126762410.1 737317..739128(-) (pepF) [Vagococcus lutrae strain AT03]
MSTPHELPKRDALPVEVTWDLTKIFENDEAFETALKEFEAKIPEVQAIKGTLAQGADAFKKALDLTLALSRELETLYVYS
HLKNDQDTANAFYQGMNSRMESMIAKTSEAISWFQPELFELTDEQIWAYFDELPELEIYRHYITSMLADRPHVLSEQEEA
LLAGAGEIFGSAGKTFSILNNADLEFPVIENEKGEKVKLSHGVYGQLMESTDPKVREAAFKGLYQVYEQFQNTLATTLST
NVKVHNYRAKVRHFSSAREAALSANHIPESVHDTLISVVHEHLPLLHRYVALRKKLLKVDSLHMYDMYTPILGDAPIRYS
YDEAVEKSKVALKPLGEEYGKVVQEAYENRWIDVVENQGKRSGAYSSGAYDTVPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHEEDAKGV
PLTSDYLNDYYADLNAKYYGPAVERDPEIALEWSRIPHFYYNYYVYQYSTGFAAASALADKIVKGEEGALDKYLTYLKAG
RSDYPIEIMKKAGVDMTQATYLEEAMKVFEARLNEFETLVDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=686925 M2901_RS03570 WP_126762410.1 737317..739128(-) (pepF) [Vagococcus lutrae strain AT03]
ATGAGTACACCACATGAATTACCAAAACGTGACGCACTTCCAGTAGAAGTGACATGGGATTTAACGAAGATTTTTGAAAA
TGACGAGGCGTTTGAAACGGCTCTTAAAGAATTTGAAGCAAAAATACCAGAGGTTCAAGCTATAAAGGGGACATTGGCGC
AAGGAGCTGACGCATTTAAAAAAGCTTTAGACTTAACGTTAGCCCTTTCTCGTGAGCTAGAAACGTTGTATGTTTACTCT
CATTTAAAGAATGACCAAGATACAGCGAATGCTTTTTATCAAGGAATGAACAGTCGGATGGAAAGCATGATTGCTAAAAC
AAGTGAAGCTATTTCATGGTTCCAACCAGAATTATTCGAACTAACAGATGAGCAAATTTGGGCGTATTTTGATGAACTTC
CAGAATTAGAAATTTATCGTCACTATATTACCTCTATGCTAGCAGACCGTCCACATGTTTTATCAGAACAAGAAGAAGCA
CTGTTAGCCGGTGCAGGTGAGATTTTTGGTTCAGCAGGTAAGACGTTCTCTATCTTAAACAATGCGGATTTAGAGTTTCC
AGTCATTGAAAATGAAAAAGGTGAAAAAGTTAAACTTTCACATGGTGTTTATGGACAATTAATGGAAAGTACTGATCCAA
AAGTGCGAGAAGCTGCTTTTAAAGGGCTGTACCAAGTGTATGAACAGTTTCAAAATACATTGGCAACGACGCTTTCAACG
AATGTTAAAGTGCATAATTACCGTGCGAAAGTTCGCCATTTTTCTTCAGCACGTGAAGCGGCATTGTCAGCTAATCACAT
TCCAGAATCCGTTCATGATACTTTGATTTCTGTGGTACATGAGCATTTGCCGTTATTACATCGCTATGTGGCTTTACGTA
AAAAACTTCTTAAAGTAGACAGTTTACATATGTATGATATGTATACCCCTATTTTAGGAGATGCACCAATTCGTTATTCT
TATGACGAAGCTGTTGAAAAATCAAAAGTCGCATTAAAACCTTTAGGGGAAGAATATGGCAAAGTCGTTCAAGAAGCTTA
TGAGAATCGTTGGATTGACGTTGTTGAAAATCAAGGAAAACGCAGTGGAGCATATTCATCAGGGGCTTACGATACAGTGC
CTTATATTTTAATGAACTGGCATGATAGTTTAGATCAATTGTATACATTAGTGCATGAGATGGGACACAGTGTTCATAGT
TACTTTACACGTTCAAATCAACCTTATGTTTACGGTGATTATTCTATTTTCTTAGCTGAGATTGCCTCAACGACAAACGA
AAACATCTTAACGGAGCACTTATTAGCGACAGAAACGGATCCAAAAGTACGCGCATTTATTTTAAATCGTTACTTAGACG
GTTTCAAAGGAACTGTTTTCCGTCAAACACAGTTTGCGGAATTTGAGCATTTCATTCACGAAGAAGATGCAAAAGGAGTT
CCACTAACAAGCGACTACTTAAACGATTACTACGCTGATTTAAACGCGAAGTATTATGGACCAGCTGTGGAGCGTGATCC
TGAGATTGCTTTAGAATGGTCACGTATTCCTCATTTCTACTACAATTATTATGTTTATCAGTATTCAACAGGTTTTGCAG
CTGCTTCAGCATTAGCTGATAAGATTGTAAAAGGCGAAGAAGGTGCTTTAGATAAGTACTTGACCTATCTAAAAGCTGGT
CGCAGTGACTATCCAATTGAAATTATGAAAAAAGCAGGCGTCGATATGACTCAAGCAACTTATTTAGAAGAAGCTATGAA
AGTCTTTGAAGCGCGATTAAATGAATTTGAAACATTAGTGGATCAATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.975

98.342

0.541