Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ORM95_RS20850 Genome accession   NZ_CP111101
Coordinates   4029875..4030867 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain FRIK1989     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4024875..4035867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORM95_RS20840 (ORM95_20720) yieP 4027767..4028459 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  ORM95_RS20845 (ORM95_20725) mdtD 4028482..4029909 (+) 1428 WP_001280821.1 multidrug transporter subunit MdtD -
  ORM95_RS20850 (ORM95_20730) cytR 4029875..4030867 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ORM95_RS20855 (ORM95_20735) rbsK 4030871..4031800 (-) 930 WP_001300603.1 ribokinase -
  ORM95_RS20860 (ORM95_20740) rbsB 4031926..4032816 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ORM95_RS20865 (ORM95_20745) rbsC 4032841..4033806 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ORM95_RS20870 (ORM95_20750) rbsA 4033811..4035316 (-) 1506 WP_000387782.1 ribose ABC transporter ATP-binding protein RbsA -
  ORM95_RS20875 (ORM95_20755) rbsD 4035324..4035743 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=686728 ORM95_RS20850 WP_000224470.1 4029875..4030867(-) (cytR) [Escherichia coli strain FRIK1989]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=686728 ORM95_RS20850 WP_000224470.1 4029875..4030867(-) (cytR) [Escherichia coli strain FRIK1989]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACGATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364