Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M2905_RS06060 Genome accession   NZ_CP097051
Coordinates   1259254..1260624 (-) Length   456 a.a.
NCBI ID   WP_248856438.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1254254..1265624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2905_RS06040 (M2905_06040) cysS 1254329..1255747 (-) 1419 WP_248856436.1 cysteine--tRNA ligase -
  M2905_RS06045 (M2905_06045) epsC 1255731..1256336 (-) 606 WP_272158218.1 serine O-acetyltransferase EpsC -
  M2905_RS06050 (M2905_06050) gltX 1256543..1258009 (-) 1467 WP_126762359.1 glutamate--tRNA ligase -
  M2905_RS06055 (M2905_06055) - 1258105..1259235 (-) 1131 WP_248856437.1 PIN/TRAM domain-containing protein -
  M2905_RS06060 (M2905_06060) radA 1259254..1260624 (-) 1371 WP_248856438.1 DNA repair protein RadA Machinery gene
  M2905_RS06065 (M2905_06065) - 1260729..1261262 (-) 534 WP_126762352.1 dUTP diphosphatase -
  M2905_RS06070 (M2905_06070) - 1261378..1261635 (-) 258 WP_126762350.1 metal-sensing transcriptional repressor -
  M2905_RS06075 (M2905_06075) - 1261650..1263296 (-) 1647 WP_248856439.1 FAD-dependent oxidoreductase -
  M2905_RS06080 (M2905_06080) - 1263297..1263611 (-) 315 WP_023607060.1 rhodanese-like domain-containing protein -
  M2905_RS06085 (M2905_06085) - 1263726..1264445 (-) 720 WP_248856440.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50133.57 Da        Isoelectric Point: 5.9797

>NTDB_id=686686 M2905_RS06060 WP_248856438.1 1259254..1260624(-) (radA) [Vagococcus lutrae strain AT19]
MAKKQRTQFECQACGYISPKYLGRCPNCGAWNEMMEVKIQEEPDRHSRVSLAGKRTTAKRLTEVAMEKEPRVKTQMDELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLNQADGVVLYVSGEESAEQIKMRAERLGIKGDDFYIYPETDMSQIRQ
TIEELQPDYVIIDSIQTMMQPEIASASGSVSQVRETTAELMQIAKTNHIAIFIVGHVTKEGALAGPRMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMVESGLQEVLNPSEVFLEERLDGATGSAIVVSMEGSRPILAEVQALVSPTLFG
NAKRTATGLDYNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAMSIASSYKDTGTSATECFIGEIGLTG
EVRRVNRIDQRIREAQKLGFKKVYVPKNNLHGYTPPSDIEVVGIATLSEALRKVFP

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=686686 M2905_RS06060 WP_248856438.1 1259254..1260624(-) (radA) [Vagococcus lutrae strain AT19]
GTGGCGAAAAAGCAACGTACACAATTTGAATGTCAAGCATGCGGTTACATTTCTCCTAAATATTTAGGTAGATGCCCTAA
CTGCGGTGCTTGGAATGAAATGATGGAAGTGAAGATACAAGAAGAACCTGACCGTCATAGTCGCGTCAGCCTAGCTGGCA
AGCGAACAACGGCTAAGCGATTAACAGAAGTGGCGATGGAAAAAGAACCCCGTGTAAAAACACAAATGGACGAGCTTAAT
CGTGTGTTGGGTGGTGGCGTTGTTCCCGGGTCACTTGTTTTAATTGGTGGAGACCCAGGGATTGGGAAATCTACGTTGTT
ACTACAAGTTTCGCAACAGCTTAATCAAGCTGATGGCGTAGTTTTATACGTGTCTGGTGAGGAAAGTGCCGAGCAGATAA
AGATGCGTGCGGAGCGCTTAGGAATTAAAGGCGATGATTTTTATATTTATCCAGAAACAGATATGTCTCAAATACGTCAA
ACTATCGAGGAATTACAACCAGACTATGTCATCATTGATTCCATCCAGACGATGATGCAACCGGAGATAGCCAGTGCATC
AGGTAGTGTGAGCCAAGTCCGAGAAACGACTGCTGAGTTGATGCAAATCGCTAAAACTAATCATATTGCTATTTTTATCG
TAGGCCATGTGACAAAGGAAGGCGCCTTAGCAGGTCCTAGAATGTTAGAACATATGGTAGATACGGTGTTGTATTTTGAA
GGGGATCGTCATCATACCTTTCGAATTTTGCGAGCGGTAAAAAACCGTTTTGGATCAACAAATGAGATTGGCATATTTGA
GATGGTGGAGTCAGGCTTACAGGAAGTCTTAAATCCTTCAGAAGTCTTCTTAGAAGAGCGATTAGACGGTGCGACTGGCT
CGGCGATTGTGGTGTCGATGGAAGGAAGTCGTCCGATTTTAGCAGAAGTTCAAGCTCTTGTATCTCCTACTTTATTTGGA
AACGCAAAGCGGACAGCGACTGGGTTAGATTATAACCGGGTGTCACTGATTATGGCAGTGTTAGAAAAACGAGCCGGTCT
TTTGTTGCAAAATCAAGATGCGTATTTAAAAGCTGCTGGTGGTGTTAAGCTAGATGAACCGGCGATTGACTTAGCCATTG
CGATGAGTATCGCTTCGAGCTACAAAGATACGGGAACTAGTGCTACCGAGTGTTTTATTGGCGAAATTGGTTTGACCGGT
GAAGTGCGACGGGTGAATCGGATTGATCAACGCATTAGAGAAGCTCAAAAGTTAGGCTTTAAAAAAGTGTACGTACCAAA
AAACAATCTACATGGTTATACACCGCCATCTGATATTGAGGTGGTCGGAATTGCGACCTTATCAGAGGCATTGAGAAAAG
TGTTTCCCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(71-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.066

99.781

0.739
  radA Streptococcus mitis SK321

74.066

99.781

0.739
  radA Streptococcus pneumoniae Rx1

73.846

99.781

0.737
  radA Streptococcus pneumoniae D39

73.846

99.781

0.737
  radA Streptococcus pneumoniae R6

73.846

99.781

0.737
  radA Streptococcus pneumoniae TIGR4

73.846

99.781

0.737
  radA Bacillus subtilis subsp. subtilis str. 168

66.15

99.123

0.656