Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M2905_RS05935 Genome accession   NZ_CP097051
Coordinates   1233635..1235446 (-) Length   603 a.a.
NCBI ID   WP_248856426.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT19     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228635..1240446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2905_RS05895 (M2905_05895) rplT 1228973..1229332 (-) 360 WP_023605496.1 50S ribosomal protein L20 -
  M2905_RS05900 (M2905_05900) rpmI 1229378..1229578 (-) 201 WP_023605495.1 50S ribosomal protein L35 -
  M2905_RS05905 (M2905_05905) infC 1229605..1230126 (-) 522 WP_023605494.1 translation initiation factor IF-3 -
  M2905_RS05910 (M2905_05910) - 1230397..1231110 (+) 714 WP_248856424.1 uracil-DNA glycosylase -
  M2905_RS05915 (M2905_05915) - 1231138..1231647 (-) 510 WP_023607092.1 gamma carbonic anhydrase family protein -
  M2905_RS05920 (M2905_05920) - 1231676..1231852 (-) 177 WP_170167759.1 hypothetical protein -
  M2905_RS05925 (M2905_05925) - 1231853..1232533 (-) 681 WP_126762414.1 NAD(P)H-dependent oxidoreductase -
  M2905_RS05930 (M2905_05930) - 1232559..1233578 (-) 1020 WP_248856425.1 zinc-binding alcohol dehydrogenase family protein -
  M2905_RS05935 (M2905_05935) pepF 1233635..1235446 (-) 1812 WP_248856426.1 oligoendopeptidase F Regulator
  M2905_RS05940 (M2905_05940) - 1235493..1236686 (-) 1194 WP_248856427.1 competence protein CoiA family protein -
  M2905_RS05945 (M2905_05945) - 1236767..1238035 (-) 1269 WP_023607086.1 NCS2 family permease -
  M2905_RS05950 (M2905_05950) - 1238208..1239623 (-) 1416 WP_248856428.1 helix-turn-helix domain-containing protein -
  M2905_RS05955 (M2905_05955) udk 1239769..1240404 (-) 636 WP_023607084.1 uridine kinase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68966.59 Da        Isoelectric Point: 4.7738

>NTDB_id=686685 M2905_RS05935 WP_248856426.1 1233635..1235446(-) (pepF) [Vagococcus lutrae strain AT19]
MSTPHELPKRDALPVEVTWDLTKIFENDEAFETALKEFEAKIPEVQAIKGTLAQGADAFKKALDLTLALSRELETLYVYS
HLKNDQDTANAFYQGMNSRMESMIAKTSEAISWFQPELFELTDEQIWAYFDELPELEIYRHYITSMLADRPHVLSEQEEA
LLAGAGEIFGSAGKTFSILNNADLEFPVIENEKGEKVKLSHGVYGQLMESTDPKVREAAFKGLYQVYEQFQNTLATTLST
NVKVHNYRAKVRHFSSAREAALSANHIPESVHDTLISVVHEHLPLLHRYVALRKKLLKVDSLHMYDMYTPILGDAPIRYS
YDEAVEKSKVALKPLGEEYGKVVQEAYENRWIDVVENQGKRSGAYSSGAYDTVPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHEEDAKGV
PLTSDYLNDYYADLNAKYYGPAVERDSEIALEWSRIPHFYYNYYVYQYSTGFAAASALADKIVKGEEGALDKYLTYLKAG
RSDYPIEIMKKAGVDMTQATYLEEAMKVFEARLNEFETLVDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=686685 M2905_RS05935 WP_248856426.1 1233635..1235446(-) (pepF) [Vagococcus lutrae strain AT19]
ATGAGTACACCACATGAATTACCAAAACGTGACGCACTTCCAGTAGAAGTGACATGGGATTTAACGAAGATTTTTGAAAA
TGACGAGGCGTTTGAAACGGCTCTTAAAGAATTTGAAGCAAAAATACCAGAGGTTCAAGCTATAAAGGGGACATTGGCGC
AAGGAGCTGACGCATTTAAAAAAGCTTTAGACTTAACGTTAGCCCTTTCTCGTGAGTTAGAAACGTTGTATGTTTATTCT
CATTTAAAGAATGACCAAGATACAGCGAATGCTTTTTATCAAGGAATGAACAGTCGGATGGAAAGCATGATTGCTAAAAC
AAGTGAAGCTATTTCATGGTTCCAACCAGAATTATTCGAACTAACAGATGAACAAATTTGGGCGTATTTTGATGAACTTC
CAGAATTAGAAATTTATCGTCACTATATTACCTCTATGCTAGCAGACCGTCCACATGTTTTATCAGAACAAGAAGAAGCA
CTGTTAGCCGGTGCAGGTGAGATTTTTGGTTCAGCAGGTAAGACGTTCTCTATCTTAAACAATGCGGATTTAGAGTTTCC
AGTCATTGAAAATGAAAAAGGTGAAAAAGTTAAACTTTCACATGGTGTTTATGGACAATTAATGGAAAGTACTGATCCAA
AAGTGCGAGAAGCTGCTTTTAAAGGGCTGTACCAAGTTTATGAACAGTTTCAAAATACATTGGCAACGACGCTTTCAACG
AATGTTAAAGTGCATAATTACCGTGCGAAAGTTCGCCATTTTTCTTCAGCACGTGAAGCGGCATTGTCAGCTAATCACAT
TCCAGAATCCGTTCATGATACTTTGATTTCTGTGGTACATGAGCATTTGCCGTTATTACATCGCTATGTGGCTTTACGTA
AAAAACTTCTTAAAGTAGACAGTTTACATATGTATGATATGTATACACCTATTTTAGGAGATGCGCCAATTCGTTATTCT
TATGACGAAGCTGTTGAAAAATCAAAAGTCGCATTAAAACCATTAGGGGAAGAATATGGTAAAGTCGTCCAAGAAGCTTA
TGAGAATCGTTGGATTGACGTTGTTGAAAACCAAGGAAAACGTAGTGGAGCTTATTCATCAGGGGCTTACGATACAGTGC
CTTATATTTTAATGAACTGGCATGATAGTTTAGACCAATTGTATACATTAGTGCATGAGATGGGACACAGTGTTCATAGT
TACTTTACACGTTCAAATCAACCTTATGTTTACGGTGATTATTCTATTTTCTTAGCTGAGATTGCCTCAACGACAAACGA
AAACATCTTAACGGAGCACTTATTAGCGACAGAAACGGATCCAAAAGTACGCGCATTTATTTTAAATCGTTACTTAGACG
GTTTCAAAGGAACTGTTTTCCGTCAAACACAGTTTGCGGAATTTGAGCATTTCATTCACGAAGAAGATGCAAAAGGAGTT
CCACTAACAAGTGACTACTTAAACGATTACTATGCTGATTTAAACGCGAAGTATTATGGACCAGCTGTGGAGCGTGATTC
TGAGATTGCTTTAGAGTGGTCACGTATTCCTCATTTCTACTACAATTATTATGTTTATCAGTATTCAACAGGTTTTGCAG
CTGCTTCAGCATTAGCTGATAAGATTGTAAAAGGCGAAGAAGGTGCTTTAGATAAGTACTTGACCTATCTAAAAGCTGGT
CGCAGTGACTATCCAATTGAAATTATGAAAAAAGCAGGCGTCGATATGACTCAAGCAACTTATTTAGAAGAAGCAATGAA
AGTCTTTGAAGCGCGATTAAATGAATTTGAAACATTAGTGGATCAATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.975

98.342

0.541