Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M2907_RS03620 Genome accession   NZ_CP097046
Coordinates   754305..755978 (+) Length   557 a.a.
NCBI ID   WP_174113994.1    Uniprot ID   -
Organism   Enterococcus faecalis strain AT29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749305..760978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2907_RS03590 (M2907_03585) - 749978..750208 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  M2907_RS03595 (M2907_03590) - 750208..751089 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  M2907_RS03600 (M2907_03595) - 751103..751918 (+) 816 WP_002364633.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  M2907_RS03605 (M2907_03600) - 752284..752841 (+) 558 WP_002361405.1 matrixin family metalloprotease -
  M2907_RS03610 (M2907_03605) - 752846..753706 (+) 861 WP_248848910.1 hypothetical protein -
  M2907_RS03615 (M2907_03610) - 753838..754287 (+) 450 WP_002358881.1 ArgR family transcriptional regulator -
  M2907_RS03620 (M2907_03615) recN 754305..755978 (+) 1674 WP_174113994.1 DNA repair protein RecN Machinery gene
  M2907_RS03625 (M2907_03620) - 756070..756180 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  M2907_RS03630 (M2907_03625) - 756248..757213 (-) 966 WP_002402987.1 magnesium transporter CorA family protein -
  M2907_RS03635 (M2907_03630) - 757458..757850 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  M2907_RS03640 (M2907_03635) mraZ 758084..758569 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  M2907_RS03645 (M2907_03640) rsmH 758584..759540 (+) 957 WP_165483260.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  M2907_RS03650 (M2907_03645) ftsL 759557..759964 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62629.12 Da        Isoelectric Point: 4.6236

>NTDB_id=686610 M2907_RS03620 WP_174113994.1 754305..755978(+) (recN) [Enterococcus faecalis strain AT29]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTRAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALVLRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSAITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=686610 M2907_RS03620 WP_174113994.1 754305..755978(+) (recN) [Enterococcus faecalis strain AT29]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGATT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACGGGCATATCAAGAGTATCGCGCACTCGAAGCTAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCCCAGTTGGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCGTTAGTTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTTGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTAGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATAACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGCCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGCAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.993

100

0.494