Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M2909_RS04180 Genome accession   NZ_CP097044
Coordinates   851525..853336 (-) Length   603 a.a.
NCBI ID   WP_248852129.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT33     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 846525..858336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2909_RS04140 (M2909_04140) rplT 846862..847221 (-) 360 WP_023605496.1 50S ribosomal protein L20 -
  M2909_RS04145 (M2909_04145) rpmI 847267..847467 (-) 201 WP_023605495.1 50S ribosomal protein L35 -
  M2909_RS04150 (M2909_04150) infC 847494..848015 (-) 522 WP_023605494.1 translation initiation factor IF-3 -
  M2909_RS04155 (M2909_04155) - 848286..848999 (+) 714 WP_248852132.1 uracil-DNA glycosylase -
  M2909_RS04160 (M2909_04160) - 849028..849537 (-) 510 WP_222316863.1 gamma carbonic anhydrase family protein -
  M2909_RS04165 (M2909_04165) - 849566..849742 (-) 177 WP_248848590.1 hypothetical protein -
  M2909_RS04170 (M2909_04170) - 849743..850423 (-) 681 WP_248852131.1 NAD(P)H-dependent oxidoreductase -
  M2909_RS04175 (M2909_04175) - 850449..851468 (-) 1020 WP_248852130.1 zinc-binding alcohol dehydrogenase family protein -
  M2909_RS04180 (M2909_04180) pepF 851525..853336 (-) 1812 WP_248852129.1 oligoendopeptidase F Regulator
  M2909_RS04185 (M2909_04185) - 853383..854576 (-) 1194 WP_248852128.1 competence protein CoiA family protein -
  M2909_RS04190 (M2909_04190) - 854656..855924 (-) 1269 WP_248852127.1 NCS2 family permease -
  M2909_RS04195 (M2909_04195) - 856097..857512 (-) 1416 WP_202585586.1 helix-turn-helix domain-containing protein -
  M2909_RS04200 (M2909_04200) udk 857658..858293 (-) 636 WP_023607084.1 uridine kinase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68976.63 Da        Isoelectric Point: 4.7738

>NTDB_id=686543 M2909_RS04180 WP_248852129.1 851525..853336(-) (pepF) [Vagococcus lutrae strain AT33]
MSTPHELPKRDALPVEVTWDLTKIFENDEAFETALKEFEAKIPEVQAIKGTLAQGADAFKKALDLTLALSRELETLYVYS
HLKNDQDTANAFYQGMNSRMESMIAKTSEAISWFQPELFELTDEQIWAYFDELPELEIYRHYITSMLADRPHVLSEQEEA
LLAGAGEIFGSAGKTFSILNNADLEFPVIENEKGEKVKLSHGVYGQLMESTDPKVREAAFKGLYQVYEQFQNTLATTLST
NVKVHNYRAKVRHFSSAREAALSANHIPESVHDTLISVVHEHLPLLHRYVALRKKLLKVDSIHMYDMYTPILGDAPIRYS
YDEAVEKSKVALKPLGEEYGKVVQEAYENRWIDVVENQGKRSGAYSSGAYDTVPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHEEDAKGV
PLTSDYLNDYYADLNAKYYGPAVERDPEIALEWSRIPHFYYNYYVYQYSTGFAAASALADKIVKGEEGALDKYLTYLKAG
RSDYPIEIMKKAGVDMTQATYLEEAMKVFEARLNEFETLVDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=686543 M2909_RS04180 WP_248852129.1 851525..853336(-) (pepF) [Vagococcus lutrae strain AT33]
ATGAGTACACCACATGAATTACCAAAACGTGACGCACTACCAGTAGAAGTGACATGGGATTTAACGAAAATTTTTGAAAA
TGACGAGGCGTTTGAAACGGCTCTTAAAGAATTTGAAGCAAAAATACCAGAGGTTCAAGCTATAAAGGGGACATTGGCGC
AAGGAGCTGACGCATTTAAAAAAGCTTTAGACTTAACGTTAGCCCTTTCTCGTGAGCTAGAAACGTTGTATGTTTACTCT
CATTTAAAGAATGACCAAGATACAGCGAATGCTTTTTATCAAGGAATGAACAGTCGGATGGAAAGCATGATTGCTAAAAC
AAGTGAAGCTATTTCATGGTTCCAACCAGAATTATTCGAACTAACAGATGAGCAAATTTGGGCGTATTTTGATGAACTTC
CAGAATTAGAAATTTATCGTCACTATATTACCTCTATGCTAGCAGACCGTCCACATGTTTTATCAGAACAAGAAGAAGCA
CTGTTAGCCGGTGCAGGTGAGATTTTTGGTTCAGCAGGTAAGACGTTCTCTATCTTAAACAATGCGGATTTAGAGTTTCC
AGTCATTGAAAATGAAAAAGGTGAAAAAGTTAAACTTTCACATGGTGTTTATGGACAATTAATGGAAAGTACTGATCCGA
AAGTGCGAGAAGCTGCGTTTAAAGGATTATACCAAGTGTATGAACAGTTTCAAAATACATTGGCAACGACGCTTTCAACG
AATGTTAAAGTGCATAATTACCGTGCGAAAGTTCGCCATTTTTCTTCAGCACGTGAAGCGGCATTGTCAGCTAATCACAT
TCCAGAATCCGTTCATGATACTTTGATTTCTGTGGTACATGAGCATTTACCGTTATTACATCGCTATGTGGCTTTACGTA
AAAAACTTCTTAAAGTAGACAGTATACATATGTATGATATGTATACACCTATTTTAGGAGATGCGCCAATTCGTTATTCT
TATGACGAAGCTGTTGAAAAATCAAAAGTCGCATTAAAACCATTAGGGGAAGAATATGGCAAAGTCGTCCAAGAAGCTTA
TGAGAATCGTTGGATTGACGTTGTTGAAAACCAAGGAAAACGTAGTGGAGCTTATTCATCAGGGGCTTACGATACAGTGC
CTTATATTTTAATGAACTGGCATGATAGTTTAGACCAATTGTATACATTAGTGCATGAGATGGGACACAGTGTTCATAGT
TACTTTACACGTTCAAATCAACCTTATGTTTACGGCGATTATTCTATTTTCTTAGCTGAGATTGCCTCAACGACAAACGA
AAACATCTTAACGGAGCACTTATTAGCGACAGAAACGGATCCAAAAGTACGCGCATTTATTTTAAATCGTTACTTAGACG
GTTTCAAAGGAACTGTTTTCCGTCAAACACAGTTTGCGGAATTTGAGCATTTCATTCACGAAGAAGATGCAAAAGGAGTT
CCACTAACAAGTGACTACTTAAACGATTACTATGCTGATTTAAACGCGAAGTATTATGGACCAGCTGTGGAGCGTGATCC
TGAGATTGCTTTAGAGTGGTCACGTATTCCTCATTTCTACTACAATTATTACGTTTATCAGTATTCAACAGGTTTTGCAG
CTGCTTCAGCATTAGCTGATAAGATTGTAAAAGGCGAAGAAGGTGCTTTAGATAAGTACTTGACCTATCTAAAAGCTGGT
CGCAGTGACTATCCAATTGAAATTATGAAAAAAGCAGGCGTCGATATGACTCAAGCAACTTATTTAGAAGAAGCAATGAA
AGTCTTTGAAGCGCGATTAAATGAATTTGAAACATTAGTGGATCAATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.806

98.342

0.539