Detailed information NTG0686441

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA50_RS07095
• Genome accession: NZ_CP111034
• Coordinates: 1506107..1507111 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA50
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1501107..1512111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA50_RS07065 (PALA50_01395)	fghA	1501199..1502050 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA50_RS07070 (PALA50_01396)	ispF	1502121..1502594 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA50_RS07075 (PALA50_01397)	truD	1502591..1503658 (+)	1068	WP_017148389.1	tRNA pseudouridine(13) synthase TruD	-
PALA50_RS07080 (PALA50_01398)	surE	1503646..1504395 (+)	750	WP_023121952.1	5'/3'-nucleotidase SurE	-
PALA50_RS07085 (PALA50_01399)	-	1504428..1505063 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA50_RS07090 (PALA50_01400)	-	1505109..1506002 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA50_RS07095 (PALA50_01401)	rpoS	1506107..1507111 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA50_RS07100 (PALA50_01402)	fdxA	1507538..1507861 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA50_RS07105 (PALA50_01403)	mutS	1507928..1510495 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA50_RS07110 (PALA50_01404)	-	1510621..1511628 (-)	1008	WP_023113260.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=686441 PALA50_RS07095 WP_003113871.1 1506107..1507111(+) (rpoS) [Pseudomonas aeruginosa strain PALA50]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=686441 PALA50_RS07095 WP_003113871.1 1506107..1507111(+) (rpoS) [Pseudomonas aeruginosa strain PALA50]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653