Detailed information NTG0686339

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA54_RS06805
• Genome accession: NZ_CP111032
• Coordinates: 1452884..1453888 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA54
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1447884..1458888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA54_RS06775 (PALA54_01341)	fghA	1447976..1448827 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
PALA54_RS06780 (PALA54_01342)	ispF	1448898..1449371 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA54_RS06785 (PALA54_01343)	truD	1449368..1450435 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PALA54_RS06790 (PALA54_01344)	surE	1450423..1451172 (+)	750	WP_269973133.1	5'/3'-nucleotidase SurE	-
PALA54_RS06795 (PALA54_01345)	-	1451205..1451840 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA54_RS06800 (PALA54_01346)	-	1451886..1452779 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA54_RS06805 (PALA54_01347)	rpoS	1452884..1453888 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA54_RS06810 (PALA54_01348)	fdxA	1454315..1454638 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA54_RS06815 (PALA54_01349)	mutS	1454705..1457272 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PALA54_RS06820 (PALA54_01350)	-	1457398..1458405 (-)	1008	WP_043084174.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=686339 PALA54_RS06805 WP_003113871.1 1452884..1453888(+) (rpoS) [Pseudomonas aeruginosa strain PALA54]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=686339 PALA54_RS06805 WP_003113871.1 1452884..1453888(+) (rpoS) [Pseudomonas aeruginosa strain PALA54]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653