Detailed information NTG0686279

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: PALA38_RS24090
• Genome accession: NZ_CP111030
• Coordinates: 5139669..5142518 (+)
• Length: 949 a.a.
• NCBI ID: WP_112778062.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA38
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5134669..5147518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA38_RS24055 (PALA38_04754)	-	5134874..5135092 (-)	219	WP_003454927.1	AlpA family transcriptional regulator	-
PALA38_RS24060 (PALA38_04755)	-	5135234..5135992 (-)	759	WP_003454930.1	hypothetical protein	-
PALA38_RS24065 (PALA38_04756)	-	5136532..5137440 (-)	909	WP_012761385.1	LysR family transcriptional regulator	-
PALA38_RS24070	-	5137580..5138009 (+)	430	Protein_4772	IS66 family transposase	-
PALA38_RS24075	-	5138145..5138405 (-)	261	WP_128655684.1	transposase	-
PALA38_RS24080	-	5138689..5138970 (+)	282	WP_006215887.1	helix-turn-helix domain-containing protein	-
PALA38_RS24085 (PALA38_04759)	-	5139006..5139575 (+)	570	WP_024973321.1	Hsp20/alpha crystallin family protein	-
PALA38_RS24090 (PALA38_04760)	clpC	5139669..5142518 (+)	2850	WP_112778062.1	heat shock survival AAA family ATPase ClpK	Regulator
PALA38_RS24095 (PALA38_04761)	cls	5142535..5143965 (+)	1431	WP_112778061.1	cardiolipin synthase	-
PALA38_RS24100 (PALA38_04762)	ftsH	5143993..5145822 (+)	1830	WP_112778060.1	ATP-dependent zinc metalloprotease FtsH	-
PALA38_RS24105 (PALA38_04763)	hsp20-GI	5145901..5146359 (+)	459	WP_112778059.1	small heat shock protein sHSP20-GI	-
PALA38_RS24110 (PALA38_04764)	yfdX1	5146382..5147296 (+)	915	WP_112778058.1	heat resistance protein YfdX1	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104447.36 Da
• Isoelectric Point: 5.7332

>NTDB_id=686279 PALA38_RS24090 WP_112778062.1 5139669..5142518(+) (clpC) [Pseudomonas aeruginosa strain PALA38]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSVAA
DADEVVDASFGESAPATAGTARRRGSGLASRISEQSEALLQEAAKHAAEFGRPEVDTEHLLLALTDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELSHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKEAELKK
LVEDWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGG
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPPAKPAEPEKPDAANVAEAPPSDASKPARKKKSADGES

Nucleotide

• Length: 2850 bp

>NTDB_id=686279 PALA38_RS24090 WP_112778062.1 5139669..5142518(+) (clpC) [Pseudomonas aeruginosa strain PALA38]
ATGGCCAGAAAACAATGCCAAGTCTGCGGCCAACCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAGGCTCTGTTTG
GCTCGCGCAGCGGTTTGTTCGAAGATTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATGCACCGTCCGTGGCGGCT
GATGCCGACGAAGTGGTCGATGCGTCTTTCGGCGAATCCGCTCCCGCAACGGCGGGCACGGCGCGCCGCCGCGGCAGTGG
GCTGGCCAGCCGTATCAGCGAACAGTCTGAGGCCCTGTTGCAGGAAGCCGCCAAACATGCTGCCGAGTTCGGCCGGCCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTGACCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGGCAGATCGAATCCGAAGCCAAGCGTGGCGACAAGCCGTTCGAAGGCGAGATCGGCGTGTCGCC
ACGTGTCAAGGATGCGCTCAGCCGTGCCTTCGTGGCCTCCAACGAGTTGAGTCATTCCTATGTGGGGCCAGAGCACTTTC
TGATCGGCCTGGCCGAAGAAGGCGAAGGCTTGGCAGCCAACCTGCTGCGCCGCTACGGGCTCACGCCGCAGGCGCTGCGC
CAGCAGGTGAGCAAGGTGGTCGGCAAGGGGGCCGAGGACGGCCGTGCCGAGACGCCGACCAATACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAACCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCAGGCGAAGTGCCCGAAACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCAGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGCTGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCAGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACGGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCGGACAAGGCCATCGACCTGCTCGACCAGGCTGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCGGTGCAGGAGCTGGAGTCCGAACTGCACCAGTTGCGGCGTGAGCAGGACT
ATGTGGCTTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTCGGCAAGCGCATCGAGGCCAAAGAGGCCGAACTCAAGAAG
CTCGTCGAGGATTGGGAGCGCGAGCGCGCCTCGGGCAGCGCCGAGGTCAAGGCAGAGCACGTGGCGCAGATCGTCTCGCG
GCTGACCGGCATCCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAACAGCGGCTGCATGAGC
GCCTGGTGGGACAGGACGAAGCAGTACGTGCCGTGGCCGATGCCGTGCGGTTGTCGCGCGCGGGCCTGCGCGAAGGCGGC
AAGCCAGTGGCCACCTTCCTGTTCCTCGGGCCGACGGGTGTGGGCAAGACCGAACTCGCCAAGGCACTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATACCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAGCCCTACAGCGTGTTGCTG
CTGGACGAGATCGAGAAGGCTCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGATCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTCGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAGACGGCACTGGCG
CGCGAGATGCTGGGTGGCGGTATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCACCCGCGAAGCCGGCCGAACCTGAAAAGCCCGATGCCGCGAACGTGGCCGAGGCACCGCCTAGCG
ACGCGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGACGGCGAATCTTGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (449-547)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (200-248)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.818	83.772	0.426
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.902	86.407	0.379
clpC	Streptococcus thermophilus LMD-9	42.112	86.828	0.366
clpC	Streptococcus thermophilus LMG 18311	41.778	86.512	0.361