Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PALA38_RS09965 Genome accession   NZ_CP111030
Coordinates   2128351..2128965 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain PALA38     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2123351..2133965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA38_RS09940 (PALA38_01967) - 2123808..2124071 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  PALA38_RS09945 (PALA38_01968) topA 2124162..2126768 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  PALA38_RS09950 (PALA38_01969) - 2126875..2127393 (+) 519 WP_003091199.1 DUF6586 family protein -
  PALA38_RS09955 (PALA38_01970) - 2127599..2127832 (+) 234 WP_003109483.1 hypothetical protein -
  PALA38_RS09960 (PALA38_01971) sulA 2127854..2128339 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  PALA38_RS09965 (PALA38_01972) dinR/lexA 2128351..2128965 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  PALA38_RS09970 (PALA38_01973) psrA 2129197..2129898 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  PALA38_RS09975 (PALA38_01974) nagZ 2130100..2131098 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  PALA38_RS09980 (PALA38_01975) - 2131110..2131847 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  PALA38_RS09985 (PALA38_01976) - 2131894..2132523 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=686247 PALA38_RS09965 WP_003091196.1 2128351..2128965(-) (dinR/lexA) [Pseudomonas aeruginosa strain PALA38]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=686247 PALA38_RS09965 WP_003091196.1 2128351..2128965(-) (dinR/lexA) [Pseudomonas aeruginosa strain PALA38]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATTCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387