Detailed information NTG0686238

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA38_RS06795
• Genome accession: NZ_CP111030
• Coordinates: 1451769..1452773 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA38
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1446769..1457773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA38_RS06765 (PALA38_01338)	fghA	1446861..1447712 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
PALA38_RS06770 (PALA38_01339)	ispF	1447783..1448256 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA38_RS06775 (PALA38_01340)	truD	1448253..1449320 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PALA38_RS06780 (PALA38_01341)	surE	1449308..1450057 (+)	750	WP_269973133.1	5'/3'-nucleotidase SurE	-
PALA38_RS06785 (PALA38_01342)	-	1450090..1450725 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA38_RS06790 (PALA38_01343)	-	1450771..1451664 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA38_RS06795 (PALA38_01344)	rpoS	1451769..1452773 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA38_RS06800 (PALA38_01345)	fdxA	1453200..1453523 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA38_RS06805 (PALA38_01346)	mutS	1453590..1456157 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PALA38_RS06810 (PALA38_01347)	-	1456283..1457290 (-)	1008	WP_043084174.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=686238 PALA38_RS06795 WP_003113871.1 1451769..1452773(+) (rpoS) [Pseudomonas aeruginosa strain PALA38]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=686238 PALA38_RS06795 WP_003113871.1 1451769..1452773(+) (rpoS) [Pseudomonas aeruginosa strain PALA38]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653