Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M2919_RS07765 Genome accession   NZ_CP097017
Coordinates   1605001..1606812 (+) Length   603 a.a.
NCBI ID   WP_248848587.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT46b     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600001..1611812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2919_RS07745 (M2919_07745) udk 1600044..1600679 (+) 636 WP_023607084.1 uridine kinase -
  M2919_RS07750 (M2919_07750) - 1600825..1602240 (+) 1416 WP_248848582.1 helix-turn-helix domain-containing protein -
  M2919_RS07755 (M2919_07755) - 1602413..1603681 (+) 1269 WP_338065015.1 NCS2 family permease -
  M2919_RS07760 (M2919_07760) - 1603761..1604954 (+) 1194 WP_248848586.1 competence protein CoiA -
  M2919_RS07765 (M2919_07765) pepF 1605001..1606812 (+) 1812 WP_248848587.1 oligoendopeptidase F Regulator
  M2919_RS07770 (M2919_07770) - 1606869..1607888 (+) 1020 WP_248848588.1 zinc-binding alcohol dehydrogenase family protein -
  M2919_RS07775 (M2919_07775) - 1607914..1608594 (+) 681 WP_248848589.1 NAD(P)H-dependent oxidoreductase -
  M2919_RS07780 (M2919_07780) - 1608595..1608771 (+) 177 WP_248848590.1 hypothetical protein -
  M2919_RS07785 (M2919_07785) - 1608800..1609309 (+) 510 WP_222316863.1 gamma carbonic anhydrase family protein -
  M2919_RS07790 (M2919_07790) - 1609338..1610051 (-) 714 WP_248848591.1 uracil-DNA glycosylase -
  M2919_RS07795 (M2919_07795) infC 1610322..1610843 (+) 522 WP_023605494.1 translation initiation factor IF-3 -
  M2919_RS07800 (M2919_07800) rpmI 1610870..1611070 (+) 201 WP_023605495.1 50S ribosomal protein L35 -
  M2919_RS07805 (M2919_07805) rplT 1611116..1611475 (+) 360 WP_023605496.1 50S ribosomal protein L20 -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68942.61 Da        Isoelectric Point: 4.7738

>NTDB_id=686236 M2919_RS07765 WP_248848587.1 1605001..1606812(+) (pepF) [Vagococcus lutrae strain AT46b]
MSTPHELPKRDALPVEVTWDLTKIFENDEAFETALKEFEAKIPEVQAIKGTLAQGADAFKKALDLTLALSRELETLYVYS
HLKNDQDTANAFYQGMNSRMESMIAKTSEAISWLQPELFELTDEQIWAYFDELPELEIYRHYITSMLADRPHVLSEQEEA
LLAGAGEIFGSAGKTFSILNNADLEFPVIENEKGEKVKLSHGVYGQLMESTDPKVREAAFKGLYQVYEQFQNTLATTLST
NVKVHNYRAKVRHFSSAREAALSANHIPESVHDTLISVVHEHLPLLHRYVALRKKLLKVDSLHMYDMYTPILGDAPIRYS
YDEAVEKSKVALKPLGEEYGKVVQEAYENRWIDVVENQGKRSGAYSSGAYDTVPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHEEDAKGV
PLTSDYLNDYYADLNAKYYGPAVERDPEIALEWSRIPHFYYNYYVYQYSTGFAAASALADKIVKGEEGALDKYLTYLKAG
RSDYPIEIMKKAGVDMTQATYLEEAMKVFEARLNEFETLVDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=686236 M2919_RS07765 WP_248848587.1 1605001..1606812(+) (pepF) [Vagococcus lutrae strain AT46b]
ATGAGTACACCACATGAATTACCAAAACGTGACGCACTTCCAGTAGAAGTGACATGGGATTTAACGAAGATTTTTGAAAA
TGACGAGGCGTTTGAAACGGCTCTTAAAGAATTTGAAGCAAAAATACCAGAGGTTCAAGCTATAAAGGGGACATTGGCGC
AAGGAGCTGACGCATTTAAAAAAGCTTTAGACTTAACGTTAGCCCTTTCTCGTGAGCTAGAAACGTTGTATGTTTACTCT
CATTTAAAGAATGACCAAGATACAGCAAATGCTTTTTATCAAGGCATGAACAGTCGGATGGAAAGCATGATTGCTAAAAC
AAGTGAAGCTATTTCATGGTTGCAACCAGAATTATTCGAACTAACAGATGAGCAAATCTGGGCGTATTTTGATGAACTTC
CAGAATTAGAAATTTATCGTCACTATATTACCTCTATGCTAGCAGACCGTCCACATGTTTTATCAGAACAAGAAGAAGCA
CTGTTAGCCGGTGCAGGTGAGATTTTTGGTTCAGCAGGTAAGACGTTCTCTATCTTAAACAATGCGGATTTAGAGTTTCC
AGTCATTGAAAATGAAAAAGGTGAAAAAGTTAAACTTTCACATGGTGTTTATGGACAATTAATGGAGAGTACTGATCCGA
AAGTGCGAGAAGCTGCGTTTAAAGGATTATACCAAGTATATGAACAGTTTCAAAATACATTGGCAACGACGCTTTCAACG
AATGTTAAAGTACATAATTACCGTGCGAAAGTTCGCCATTTTTCTTCAGCACGTGAAGCGGCATTGTCAGCTAATCACAT
TCCAGAATCCGTTCATGATACTTTGATTTCTGTGGTACATGAGCATTTGCCGTTATTACATCGCTATGTGGCTTTACGTA
AAAAACTTCTTAAAGTAGACAGTTTACATATGTATGATATGTATACACCTATTTTAGGAGATGCGCCAATTCGTTATTCT
TATGACGAAGCTGTTGAAAAATCAAAAGTCGCATTAAAACCTTTAGGGGAAGAATATGGCAAAGTCGTTCAAGAAGCTTA
TGAGAATCGTTGGATTGACGTTGTTGAAAATCAAGGAAAACGCAGTGGAGCATATTCATCAGGGGCTTACGATACAGTGC
CTTATATTTTAATGAACTGGCATGATAGTTTAGATCAATTGTATACATTAGTGCATGAGATGGGACACAGTGTTCATAGT
TACTTTACACGTTCAAATCAACCTTATGTTTACGGTGATTATTCTATTTTCTTAGCTGAGATTGCCTCAACGACAAACGA
AAACATCTTAACGGAGCACTTATTAGCGACAGAAACGGATCCAAAAGTACGCGCTTTTATTTTAAATCGTTACTTAGACG
GTTTCAAAGGAACTGTTTTCCGTCAAACACAATTTGCGGAATTTGAGCATTTCATTCACGAAGAAGATGCAAAAGGAGTT
CCACTAACAAGCGACTACTTAAACGATTACTACGCTGATTTAAACGCGAAGTATTATGGACCAGCTGTGGAGCGTGATCC
TGAGATTGCTTTAGAATGGTCACGTATTCCTCATTTCTACTACAATTATTATGTTTATCAGTATTCAACAGGTTTTGCAG
CTGCTTCAGCATTAGCTGATAAGATTGTAAAAGGCGAAGAAGGTGCTTTAGATAAGTACTTGACCTATCTAAAAGCTGGT
CGCAGTGACTATCCAATTGAAATTATGAAAAAAGCAGGCGTCGATATGACTCAAGCAACTTATTTAGAAGAAGCTATGAA
AGTCTTTGAAGCGCGATTAAATGAATTTGAAACATTAGTGGATCAATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.806

98.342

0.539