Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CCX79_RS01960 Genome accession   NZ_AP017935
Coordinates   375925..377295 (+) Length   456 a.a.
NCBI ID   WP_072612929.1    Uniprot ID   -
Organism   Leuconostoc suionicum strain LT-38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 370925..382295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX79_RS01935 (LEUCM_00370) - 371628..372566 (+) 939 WP_072612924.1 DUF1810 family protein -
  CCX79_RS01940 (LEUCM_00371) - 372593..374023 (-) 1431 WP_072612925.1 aspartate ammonia-lyase -
  CCX79_RS01945 (LEUCM_00372) rpiA 374141..374827 (-) 687 WP_072612926.1 ribose-5-phosphate isomerase RpiA -
  CCX79_RS01950 (LEUCM_00373) - 374824..375126 (-) 303 WP_257786599.1 GNAT family N-acetyltransferase -
  CCX79_RS01955 (LEUCM_00374) - 375337..375876 (+) 540 WP_072612928.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  CCX79_RS01960 (LEUCM_00375) radA 375925..377295 (+) 1371 WP_072612929.1 DNA repair protein RadA Machinery gene
  CCX79_RS01965 (LEUCM_00376) - 377298..377672 (+) 375 WP_072612930.1 hypothetical protein -
  CCX79_RS01970 (LEUCM_00377) - 377715..378953 (-) 1239 WP_072612931.1 ABC transporter permease -
  CCX79_RS01975 (LEUCM_00378) - 379087..379671 (+) 585 WP_072612932.1 TetR/AcrR family transcriptional regulator -
  CCX79_RS01980 (LEUCM_00379) gltX 379770..381266 (+) 1497 WP_072612933.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49193.41 Da        Isoelectric Point: 5.8326

>NTDB_id=68621 CCX79_RS01960 WP_072612929.1 375925..377295(+) (radA) [Leuconostoc suionicum strain LT-38]
MAKVKTQFICSNCGFVSARYLGRCSNCGEWGTLVEEKIQPESNDRKSRVSLDGRNAKVEKINEITSEEAPRVATKLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAQEGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMTAVKKQ
IEELQPNFVVIDSVQTMQEPDVSSAVGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRNGGLIEVANPSEIFLEERLSGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTAAGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
VRSVADIEGRLKEAKKLGFKRAIVPKNNLNGVELPHGIQVIGVTTLSEALKIALGE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=68621 CCX79_RS01960 WP_072612929.1 375925..377295(+) (radA) [Leuconostoc suionicum strain LT-38]
ATCGCTAAAGTAAAAACACAATTTATATGTTCCAACTGCGGTTTTGTTTCGGCGCGGTATTTGGGACGCTGCTCAAATTG
TGGTGAATGGGGCACGCTTGTTGAAGAAAAAATTCAACCAGAATCAAATGACCGTAAAAGTCGTGTGAGTCTAGATGGAC
GCAATGCAAAAGTTGAAAAAATAAACGAGATTACATCTGAAGAGGCACCGCGCGTAGCAACTAAGCTTAAGGAATTGAAC
CGAGTTTTAGGCGGTGGTGTTGTCCCAGGTTCCATGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTACT
ACTTCAAGTATCTGGACAACTCGCTCAAGAAGGTCGGGTACTATATGTAACCGGCGAAGAGTCTGCCACACAAGTGAAAC
TGCGTGCCGATCGCTTGGGCGTTGGGCACGATGAGTTTTATTTATATCCGGAAACGGATATGACGGCCGTGAAAAAGCAG
ATTGAGGAATTACAACCGAATTTTGTTGTTATTGACTCGGTACAAACCATGCAAGAACCTGATGTTTCATCGGCTGTTGG
ATCAGTATCACAAATTCGAGAAGTGACAGCCGATCTGTTGCAAATCGCCAAGACTAATAATATTTCGATATTTATAGTAG
GGCATGTGACTAAAGATGGTGCCATAGCGGGGCCAAAGATTCTGGAGCATATGGTCGATACTGTATTGTACTTTGAAGGA
GATAGTAATTATAAGTATCGCATTCTGCGTGCGGTTAAAAATCGTTTTGGCGCAACGAATGAATTAGGTATTTTTGAAAT
GCGTAATGGCGGTTTGATAGAAGTGGCTAATCCCTCTGAGATTTTCTTAGAAGAACGCTTATCTGGTGCCACTGGATCGG
CGATTGTGGTCGCGTTAGAAGGATCACGACCTATTTTGGTTGAATTACAAGCCCTAGTAACGCCGACCGTATTTGGTAAT
GCACAGCGTACAGCAGCAGGACTCGATAGAAATCGTGTGTCATTGATTATGGCAGTATTAGAAAAACGCGCTAACTTATT
ATTACAAAATCAAGATGCGTATTTAAAGGCAGCAGGTGGCGTGAAACTTGATGAACCAGCAATTGATTTAGCAATCGCTG
TTGCTCTGGCTAGTTCATATCATGATAAAGAATCAAGACCAAGTGATGTCTTTGTTGGCGAAATTGGTCTAACTGGTGAA
GTCCGTAGCGTAGCAGATATTGAAGGGCGATTAAAAGAAGCTAAAAAATTAGGCTTTAAGCGTGCTATTGTTCCTAAAAA
TAATTTAAACGGCGTTGAATTACCTCATGGTATTCAAGTTATTGGAGTAACAACATTAAGTGAGGCGCTTAAAATTGCCT
TAGGAGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

AAA domain (AAA_25)

(68-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.962

98.904

0.662
  radA Streptococcus pneumoniae D39

66.962

98.904

0.662
  radA Streptococcus pneumoniae R6

66.962

98.904

0.662
  radA Streptococcus pneumoniae TIGR4

66.962

98.904

0.662
  radA Streptococcus mitis NCTC 12261

66.741

98.904

0.66
  radA Streptococcus mitis SK321

66.741

98.904

0.66
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.616

Multiple sequence alignment