Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M2925_RS03535 Genome accession   NZ_CP097004
Coordinates   730347..732020 (+) Length   557 a.a.
NCBI ID   WP_174092418.1    Uniprot ID   -
Organism   Enterococcus faecalis strain LS05-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 725347..737020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2925_RS03505 (M2925_03505) - 725598..726443 (+) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  M2925_RS03510 (M2925_03510) xseA 726453..727799 (+) 1347 WP_086281014.1 exodeoxyribonuclease VII large subunit -
  M2925_RS03515 (M2925_03515) - 727801..728031 (+) 231 WP_002383396.1 exodeoxyribonuclease VII small subunit -
  M2925_RS03520 (M2925_03520) - 728031..728912 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  M2925_RS03525 (M2925_03525) - 728926..729741 (+) 816 WP_002383397.1 TlyA family RNA methyltransferase -
  M2925_RS03530 (M2925_03530) - 729880..730329 (+) 450 WP_002358881.1 ArgR family transcriptional regulator -
  M2925_RS03535 (M2925_03535) recN 730347..732020 (+) 1674 WP_174092418.1 DNA repair protein RecN Machinery gene
  M2925_RS03540 (M2925_03540) - 732111..732221 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  M2925_RS03545 (M2925_03545) - 732289..733254 (-) 966 WP_002419343.1 magnesium transporter CorA family protein -
  M2925_RS03550 (M2925_03550) - 733499..733891 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  M2925_RS03555 (M2925_03555) mraZ 734125..734610 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  M2925_RS03560 (M2925_03560) rsmH 734625..735581 (+) 957 WP_010710705.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  M2925_RS03565 (M2925_03565) ftsL 735598..736005 (+) 408 WP_002419342.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62716.20 Da        Isoelectric Point: 4.6236

>NTDB_id=686038 M2925_RS03535 WP_174092418.1 730347..732020(+) (recN) [Enterococcus faecalis strain LS05-2]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLTVKE
KYTRAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAKKQQAAHQQALVLRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=686038 M2925_RS03535 WP_174092418.1 730347..732020(+) (recN) [Enterococcus faecalis strain LS05-2]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAACAGTCAAAGAA
AAATATACACGGGCATATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATTGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCTAGGTTAATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAAAGAAACAACAAGCGGCTCATCAACAAGCGTTAGTTTTACGAAAAGAGCGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCACGAGTGATGCTAGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAG
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCCCAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.421

100

0.496