Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M2926_RS03565 Genome accession   NZ_CP097002
Coordinates   742956..744629 (+) Length   557 a.a.
NCBI ID   WP_025186570.1    Uniprot ID   -
Organism   Enterococcus faecalis strain LS06-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 737956..749629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2926_RS03535 (M2926_03535) - 738207..739052 (+) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  M2926_RS03540 (M2926_03540) xseA 739062..740408 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  M2926_RS03545 (M2926_03545) - 740410..740640 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  M2926_RS03550 (M2926_03550) - 740640..741521 (+) 882 WP_248869765.1 polyprenyl synthetase family protein -
  M2926_RS03555 (M2926_03555) - 741535..742350 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  M2926_RS03560 (M2926_03560) - 742489..742938 (+) 450 WP_002358881.1 ArgR family transcriptional regulator -
  M2926_RS03565 (M2926_03565) recN 742956..744629 (+) 1674 WP_025186570.1 DNA repair protein RecN Machinery gene
  M2926_RS03570 (M2926_03570) - 744721..744831 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  M2926_RS03575 (M2926_03575) - 744899..745864 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  M2926_RS03580 (M2926_03580) - 746109..746501 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  M2926_RS03585 (M2926_03585) mraZ 746735..747220 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  M2926_RS03590 (M2926_03590) rsmH 747235..748191 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  M2926_RS03595 (M2926_03595) ftsL 748208..748615 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62685.05 Da        Isoelectric Point: 4.5521

>NTDB_id=686002 M2926_RS03565 WP_025186570.1 742956..744629(+) (recN) [Enterococcus faecalis strain LS06-1]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAERQQAAHQQALTLRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=686002 M2926_RS03565 WP_025186570.1 742956..744629(+) (recN) [Enterococcus faecalis strain LS06-1]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAGTTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTGGCTGGTGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCTGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCCTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATTACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAGACAACAAGCCGCTCATCAACAAGCGTTGACTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTGTATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGTCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCTGATGAACATTATTTTATTGA
AAAAGAAATTGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501