Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LDH51_RS16485 Genome accession   NZ_CP097001
Coordinates   3295714..3296343 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NCCP 15734     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3290714..3301343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDH51_RS16470 helD 3290956..3293010 (-) 2055 WP_000420537.1 DNA helicase IV -
  LDH51_RS16475 yccF 3293133..3293579 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LDH51_RS16480 yccS 3293589..3295751 (+) 2163 WP_000875044.1 YccS family putative transporter -
  LDH51_RS16485 sxy/tfoX 3295714..3296343 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LDH51_RS16490 sulA 3296562..3297071 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LDH51_RS16495 ompA 3297428..3298480 (+) 1053 WP_001361736.1 porin OmpA -
  LDH51_RS16500 matP 3298556..3299008 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LDH51_RS16505 ycbZ 3299194..3300954 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=685981 LDH51_RS16485 WP_000839153.1 3295714..3296343(-) (sxy/tfoX) [Escherichia coli strain NCCP 15734]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=685981 LDH51_RS16485 WP_000839153.1 3295714..3296343(-) (sxy/tfoX) [Escherichia coli strain NCCP 15734]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1