NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	CLAUR_RS17195	Genome accession	NZ_CP096988
Coordinates	3839501..3840853 (+)	Length	450 a.a.
NCBI ID	WP_077833993.1	Uniprot ID	-
Organism	Clostridium felsineum strain DSM 793
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3834501..3845853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLAUR_RS17175 (CLAUR_034590)	-	3834823..3835284 (+)	462	WP_077833997.1	CtsR family transcriptional regulator	-
CLAUR_RS17180 (CLAUR_034600)	-	3835309..3835836 (+)	528	WP_077833996.1	UvrB/UvrC motif-containing protein	-
CLAUR_RS17185 (CLAUR_034610)	-	3835838..3836860 (+)	1023	WP_077833995.1	protein arginine kinase	-
CLAUR_RS17190 (CLAUR_034620)	-	3836871..3839321 (+)	2451	WP_077851559.1	ATP-dependent Clp protease ATP-binding subunit	-
CLAUR_RS17195 (CLAUR_034630)	radA	3839501..3840853 (+)	1353	WP_077833993.1	DNA repair protein RadA	Machinery gene
CLAUR_RS17200 (CLAUR_034640)	disA	3840865..3841938 (+)	1074	WP_077833992.1	DNA integrity scanning diadenylate cyclase DisA	-
CLAUR_RS17205 (CLAUR_034650)	-	3842119..3843747 (-)	1629	WP_077850524.1	IS1182 family transposase	-
CLAUR_RS17210 (CLAUR_034660)	-	3843852..3844250 (-)	399	WP_077833991.1	DUF1573 domain-containing protein	-
CLAUR_RS17215 (CLAUR_034670)	-	3844640..3845737 (+)	1098	WP_077833990.1	PIN/TRAM domain-containing protein	-

Sequence

Protein

Download Length: 450 a.a. Molecular weight: 49876.63 Da Isoelectric Point: 8.4368

                                >NTDB_id=685960 CLAUR_RS17195 WP_077833993.1 3839501..3840853(+) (radA) [Clostridium felsineum strain DSM 793]

MSKIKSYFVCQECGYQSVKWLGKCPSCNNWNSFIEEEKVENKKTSKIILNSEPKCINNIKSGQYERYDTNNKELNRVLGG

GLVKGSITLISGAPGIGKSTLLLQICQDIAVKYGKVLYVSGEESENQIKMRGDRLKVTSPNIYILSETNMENIEEHVNNI

KPAFVIIDSIQTLYKEQITSAPGSVSQVRECANDIMRIAKTSNIPFFIVAHVTKQGELAGPRVLEHIVDTVLTFEGQRTE

EFRILRTVKNRFGTTSEIGVFEMQEEGLKQIYNPSGLFLEETNFNQEGSVVIGIMEGTRPILVEIQALVSKTNAVMPRRT

SVGIDSSRLNLILAVLEKKLKVPFYNCDVYVNVVGGLNIEGTYGDLGLALALISSVKGKSIKLDKLIVIGEIGLTGEVRP

VSFSDRIVNEADKLGFKNVLVPHKNIKSDKNVAINTIGVSYLKEAVNKVF

Nucleotide

Download Length: 1353 bp

                                >NTDB_id=685960 CLAUR_RS17195 WP_077833993.1 3839501..3840853(+) (radA) [Clostridium felsineum strain DSM 793]

ATGAGCAAAATTAAAAGTTATTTTGTATGTCAGGAATGTGGATATCAGTCAGTAAAATGGCTTGGAAAATGTCCATCTTG

TAATAACTGGAATAGCTTTATAGAGGAAGAAAAGGTAGAAAATAAAAAGACAAGTAAAATAATATTAAATAGTGAACCCA

AATGTATAAATAATATAAAATCAGGACAGTATGAAAGATATGATACAAATAATAAAGAGCTAAATAGAGTACTTGGTGGA

GGACTTGTTAAAGGATCAATTACATTAATATCAGGGGCACCTGGTATAGGAAAGTCCACACTCCTTCTACAAATTTGTCA

GGATATAGCAGTGAAGTACGGAAAAGTGCTTTATGTTTCAGGAGAAGAGTCTGAAAACCAAATAAAAATGCGTGGAGATA

GACTAAAAGTAACCTCTCCTAATATATATATACTATCAGAAACTAATATGGAAAATATAGAAGAGCATGTCAATAATATA

AAGCCTGCCTTTGTTATAATAGATTCAATACAAACATTGTATAAAGAACAAATAACTTCTGCTCCAGGCAGTGTTTCTCA

AGTTAGAGAATGTGCGAATGATATTATGAGAATAGCCAAAACTAGTAATATACCATTTTTTATAGTAGCACATGTAACAA

AGCAGGGGGAACTTGCAGGACCAAGAGTATTAGAACATATTGTAGATACGGTGCTTACATTTGAAGGACAAAGAACAGAA

GAATTTAGGATACTTAGGACAGTTAAAAATCGTTTTGGTACTACAAGTGAAATTGGTGTATTTGAAATGCAAGAAGAAGG

ACTTAAACAAATATATAATCCTTCAGGGCTATTTCTAGAGGAAACAAATTTTAATCAAGAAGGTTCAGTTGTAATAGGCA

TTATGGAAGGAACAAGACCAATACTTGTTGAGATACAAGCGTTAGTTTCAAAAACAAATGCAGTAATGCCAAGAAGAACA

TCTGTTGGAATTGATAGTTCTAGACTTAATTTAATTTTAGCAGTTCTTGAAAAAAAGCTTAAAGTTCCATTTTATAATTG

TGATGTTTACGTAAATGTAGTAGGCGGATTAAATATTGAAGGAACCTATGGAGATTTAGGATTAGCACTTGCCTTAATTT

CAAGTGTTAAAGGTAAAAGTATAAAGTTAGATAAGCTGATAGTTATAGGTGAAATTGGATTAACGGGAGAAGTAAGACCA

GTATCTTTTTCAGATAGAATTGTGAATGAAGCGGATAAATTAGGATTTAAAAATGTATTAGTTCCACACAAAAATATTAA

AAGTGATAAAAATGTTGCGATAAATACAATAGGTGTGTCTTATTTAAAGGAAGCTGTAAATAAAGTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-216)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.331	100	0.507
radA	Streptococcus mitis SK321	49.119	100	0.496
radA	Streptococcus mitis NCTC 12261	49.119	100	0.496
radA	Streptococcus pneumoniae Rx1	49.119	100	0.496
radA	Streptococcus pneumoniae D39	49.119	100	0.496
radA	Streptococcus pneumoniae R6	49.119	100	0.496
radA	Streptococcus pneumoniae TIGR4	49.119	100	0.496

Detailed information NTG0685960