Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CROST_RS20165 Genome accession   NZ_CP096983
Coordinates   4378749..4380101 (-) Length   450 a.a.
NCBI ID   WP_077833993.1    Uniprot ID   -
Organism   Clostridium felsineum strain DSM 7320     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4373749..4385101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CROST_RS20140 (CROST_040560) - 4374017..4374982 (+) 966 WP_077833988.1 ABC transporter ATP-binding protein -
  CROST_RS20145 (CROST_040570) ispD 4375038..4375718 (-) 681 WP_077833989.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CROST_RS20150 (CROST_040580) - 4375742..4376839 (-) 1098 WP_077833990.1 PIN/TRAM domain-containing protein -
  CROST_RS20155 (CROST_040590) - 4377229..4377627 (+) 399 WP_077833991.1 DUF1573 domain-containing protein -
  CROST_RS20160 (CROST_040600) disA 4377664..4378737 (-) 1074 WP_077833992.1 DNA integrity scanning diadenylate cyclase DisA -
  CROST_RS20165 (CROST_040610) radA 4378749..4380101 (-) 1353 WP_077833993.1 DNA repair protein RadA Machinery gene
  CROST_RS20170 (CROST_040620) - 4380281..4382731 (-) 2451 WP_077833994.1 ATP-dependent Clp protease ATP-binding subunit -
  CROST_RS20175 (CROST_040630) - 4382742..4383764 (-) 1023 WP_077833995.1 protein arginine kinase -
  CROST_RS20180 (CROST_040640) - 4383766..4384293 (-) 528 WP_077833996.1 UvrB/UvrC motif-containing protein -
  CROST_RS20185 (CROST_040650) - 4384318..4384779 (-) 462 WP_077833997.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49876.63 Da        Isoelectric Point: 8.4368

>NTDB_id=685914 CROST_RS20165 WP_077833993.1 4378749..4380101(-) (radA) [Clostridium felsineum strain DSM 7320]
MSKIKSYFVCQECGYQSVKWLGKCPSCNNWNSFIEEEKVENKKTSKIILNSEPKCINNIKSGQYERYDTNNKELNRVLGG
GLVKGSITLISGAPGIGKSTLLLQICQDIAVKYGKVLYVSGEESENQIKMRGDRLKVTSPNIYILSETNMENIEEHVNNI
KPAFVIIDSIQTLYKEQITSAPGSVSQVRECANDIMRIAKTSNIPFFIVAHVTKQGELAGPRVLEHIVDTVLTFEGQRTE
EFRILRTVKNRFGTTSEIGVFEMQEEGLKQIYNPSGLFLEETNFNQEGSVVIGIMEGTRPILVEIQALVSKTNAVMPRRT
SVGIDSSRLNLILAVLEKKLKVPFYNCDVYVNVVGGLNIEGTYGDLGLALALISSVKGKSIKLDKLIVIGEIGLTGEVRP
VSFSDRIVNEADKLGFKNVLVPHKNIKSDKNVAINTIGVSYLKEAVNKVF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=685914 CROST_RS20165 WP_077833993.1 4378749..4380101(-) (radA) [Clostridium felsineum strain DSM 7320]
ATGAGCAAAATTAAAAGTTATTTTGTATGTCAGGAATGTGGATATCAGTCAGTAAAATGGCTTGGAAAATGTCCATCTTG
TAATAACTGGAATAGCTTTATAGAGGAAGAAAAGGTAGAAAATAAAAAGACAAGTAAAATAATATTAAATAGTGAACCCA
AATGTATAAATAATATAAAATCAGGACAGTATGAAAGATATGATACAAATAATAAAGAGCTAAATAGAGTACTTGGTGGA
GGACTTGTTAAAGGATCAATTACATTAATATCAGGGGCACCTGGTATAGGAAAGTCCACACTCCTTCTACAAATTTGTCA
GGATATAGCAGTGAAATACGGAAAAGTGCTTTATGTTTCAGGAGAAGAGTCTGAAAACCAAATAAAAATGCGTGGAGATA
GACTAAAAGTAACCTCTCCTAATATATATATACTATCAGAAACTAATATGGAAAATATAGAAGAGCATGTCAATAATATA
AAGCCTGCCTTTGTTATAATAGATTCAATACAAACATTGTATAAAGAACAAATAACTTCTGCTCCAGGCAGTGTTTCTCA
AGTTAGAGAATGTGCGAATGATATTATGAGAATAGCCAAAACTAGTAATATACCATTTTTTATAGTAGCACATGTAACAA
AGCAGGGGGAACTTGCAGGACCAAGAGTATTAGAACATATTGTAGATACGGTGCTTACATTTGAAGGACAAAGAACAGAA
GAATTTAGGATACTTAGGACAGTTAAAAATCGTTTTGGTACTACAAGTGAAATTGGTGTATTTGAAATGCAAGAAGAAGG
ACTTAAACAAATATATAATCCTTCAGGGCTATTTCTAGAGGAAACAAATTTTAATCAAGAAGGTTCAGTTGTAATAGGCA
TTATGGAAGGAACAAGACCAATACTTGTTGAGATACAAGCGTTAGTTTCAAAAACAAATGCAGTAATGCCAAGAAGAACA
TCTGTTGGAATTGATAGTTCTAGACTTAATTTAATTTTAGCAGTTCTTGAAAAAAAGCTTAAAGTTCCATTTTATAATTG
TGATGTTTACGTAAATGTAGTAGGCGGATTAAATATTGAAGGAACCTATGGAGATTTAGGATTAGCACTTGCCTTAATTT
CAAGTGTTAAAGGTAAAAGTATAAAGTTAGATAAGCTGATAGTTATAGGTGAAATTGGATTAACGGGAGAAGTAAGACCA
GTATCTTTTTCAGATAGAATTGTGAATGAAGCGGATAAATTAGGATTTAAAAATGTATTAGTTCCACACAAAAATATTAA
AAGTGATAAAAATGTTGCGATAAATACAATAGGTGTGTCTTATTTAAAGGAAGCTGTAAATAAAGTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-216)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.331

100

0.507
  radA Streptococcus mitis SK321

49.119

100

0.496
  radA Streptococcus mitis NCTC 12261

49.119

100

0.496
  radA Streptococcus pneumoniae Rx1

49.119

100

0.496
  radA Streptococcus pneumoniae D39

49.119

100

0.496
  radA Streptococcus pneumoniae R6

49.119

100

0.496
  radA Streptococcus pneumoniae TIGR4

49.119

100

0.496