Detailed information NTG0685913

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ORI30_RS07350
• Genome accession: NZ_CP110996
• Coordinates: 1512454..1513446 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain XYEH3783
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1507454..1518446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ORI30_RS07330 (ORI30_07330)	ygbM	1508085..1508861 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
ORI30_RS07335 (ORI30_07335)	ygbN	1508950..1510314 (+)	1365	WP_000104433.1	GntP family transporter	-
ORI30_RS07340 (ORI30_07340)	-	1510457..1511500 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
ORI30_RS07345 (ORI30_07345)	-	1511725..1512276 (+)	552	WP_001179442.1	flavodoxin family protein	-
ORI30_RS07350 (ORI30_07350)	rpoS	1512454..1513446 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ORI30_RS07355 (ORI30_07355)	nlpD	1513509..1514603 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ORI30_RS07360 (ORI30_07360)	pcm	1514788..1515414 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ORI30_RS07365 (ORI30_07365)	surE	1515408..1516169 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ORI30_RS07370 (ORI30_07370)	truD	1516150..1517199 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
ORI30_RS07375 (ORI30_07375)	ispF	1517196..1517675 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ORI30_RS07380 (ORI30_07380)	ispD	1517675..1518385 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=685913 ORI30_RS07350 WP_000081550.1 1512454..1513446(-) (rpoS) [Escherichia coli strain XYEH3783]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=685913 ORI30_RS07350 WP_000081550.1 1512454..1513446(-) (rpoS) [Escherichia coli strain XYEH3783]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715