Detailed information NTG0685834

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ORI32_RS05160
• Genome accession: NZ_CP110988
• Coordinates: 1077992..1078984 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain XYEH3314
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1072992..1083984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ORI32_RS05130 (ORI32_05125)	ispD	1073053..1073763 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ORI32_RS05135 (ORI32_05130)	ispF	1073763..1074242 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ORI32_RS05140 (ORI32_05135)	truD	1074239..1075288 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ORI32_RS05145 (ORI32_05140)	surE	1075269..1076030 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ORI32_RS05150 (ORI32_05145)	pcm	1076024..1076650 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ORI32_RS05155 (ORI32_05150)	nlpD	1076835..1077929 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ORI32_RS05160 (ORI32_05155)	rpoS	1077992..1078984 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ORI32_RS05165 (ORI32_05160)	ygbN	1079078..1080442 (-)	1365	WP_000104441.1	GntP family transporter	-
ORI32_RS05170 (ORI32_05165)	ygbM	1080531..1081307 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ORI32_RS05175 (ORI32_05170)	ygbL	1081312..1081950 (-)	639	WP_001278994.1	aldolase	-
ORI32_RS05180 (ORI32_05175)	otnK	1081947..1083209 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=685834 ORI32_RS05160 WP_000081550.1 1077992..1078984(+) (rpoS) [Escherichia coli strain XYEH3314]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=685834 ORI32_RS05160 WP_000081550.1 1077992..1078984(+) (rpoS) [Escherichia coli strain XYEH3314]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715