Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ORI33_RS22285 Genome accession   NZ_CP110978
Coordinates   4654148..4655140 (-) Length   330 a.a.
NCBI ID   WP_072650737.1    Uniprot ID   -
Organism   Escherichia coli strain XYEH3934     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4649148..4660140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORI33_RS22275 (ORI33_22270) yieP 4652040..4652732 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  ORI33_RS22280 (ORI33_22275) mdtD 4652755..4654182 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ORI33_RS22285 (ORI33_22280) cytR 4654148..4655140 (-) 993 WP_072650737.1 ribose operon transcriptional repressor RbsR Regulator
  ORI33_RS22290 (ORI33_22285) rbsK 4655144..4656073 (-) 930 WP_001300603.1 ribokinase -
  ORI33_RS22295 (ORI33_22290) rbsB 4656199..4657089 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ORI33_RS22300 (ORI33_22295) rbsC 4657114..4658079 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ORI33_RS22305 (ORI33_22300) rbsA 4658084..4659589 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ORI33_RS22310 (ORI33_22305) rbsD 4659597..4660016 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36597.88 Da        Isoelectric Point: 5.2141

>NTDB_id=685808 ORI33_RS22285 WP_072650737.1 4654148..4655140(-) (cytR) [Escherichia coli strain XYEH3934]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAVDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=685808 ORI33_RS22285 WP_072650737.1 4654148..4655140(-) (cytR) [Escherichia coli strain XYEH3934]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCAGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGGTTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364