Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ORI33_RS21925 Genome accession   NZ_CP110978
Coordinates   4583929..4585758 (-) Length   609 a.a.
NCBI ID   WP_154167162.1    Uniprot ID   -
Organism   Escherichia coli strain XYEH3934     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4578929..4590758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORI33_RS21900 (ORI33_21895) bioP 4579647..4580546 (-) 900 WP_001196242.1 biotin transporter -
  ORI33_RS21905 (ORI33_21900) yigL 4580622..4581422 (-) 801 WP_000285362.1 sugar/pyridoxal phosphate phosphatase YigL -
  ORI33_RS21910 (ORI33_21905) pldB 4581430..4582452 (-) 1023 WP_000487654.1 lysophospholipase L2 -
  ORI33_RS21915 (ORI33_21910) rhtB 4582563..4583183 (+) 621 WP_000171719.1 homoserine/homoserine lactone efflux protein -
  ORI33_RS21920 (ORI33_21915) rhtC 4583245..4583865 (-) 621 WP_000928829.1 threonine export protein RhtC -
  ORI33_RS21925 (ORI33_21920) recQ 4583929..4585758 (-) 1830 WP_154167162.1 ATP-dependent DNA helicase RecQ Machinery gene
  ORI33_RS21930 (ORI33_21925) pldA 4585891..4586760 (-) 870 WP_001259700.1 phospholipase A -
  ORI33_RS21935 (ORI33_21930) yigI 4586925..4587392 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  ORI33_RS21940 (ORI33_21935) rarD 4587444..4588334 (+) 891 WP_000339104.1 EamA family transporter RarD -
  ORI33_RS21945 (ORI33_21940) yigG 4588429..4588809 (+) 381 WP_000944218.1 protein YigG -
  ORI33_RS21950 (ORI33_21945) yigF 4588823..4589203 (+) 381 WP_000032581.1 DUF2628 domain-containing protein -
  ORI33_RS21955 (ORI33_21950) - 4589244..4589390 (-) 147 Protein_4297 CorA family divalent cation transporter -
  ORI33_RS21960 (ORI33_21955) - 4589573..4590421 (+) 849 Protein_4298 YPO3983 family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68347.46 Da        Isoelectric Point: 7.2544

>NTDB_id=685803 ORI33_RS21925 WP_154167162.1 4583929..4585758(-) (recQ) [Escherichia coli strain XYEH3934]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDPQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=685803 ORI33_RS21925 WP_154167162.1 4583929..4585758(-) (recQ) [Escherichia coli strain XYEH3934]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACCGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAACAGCAACTTGAAGT
GATGACAGGCTGCCGCACCGGGCAAATTCGCTTACTGTATATCGCCCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTCGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGGTTCCCGACGCTGCCGTTTATGGCGCTGACCGCCACAGCCGACGACAC
CACGCGCCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAGTTCAAACCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATT
ATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAGCGCGATGACCCGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTG
GCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTATTGCTGAACTATTTTGGCGAAGGGCGTCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAGTACGACGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGTGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTTAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGTAAACCGTTTATGGCGCTTATCCGCGCGCATGTTGACGGCGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.034

97.209

0.389