Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M0N98_RS06565 Genome accession   NZ_CP096965
Coordinates   1642510..1643877 (-) Length   455 a.a.
NCBI ID   WP_005842575.1    Uniprot ID   R9HQL2
Organism   Phocaeicola vulgatus strain CL10T00C06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1637510..1648877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0N98_RS06550 (M0N98_01329) - 1639423..1640043 (-) 621 WP_005848856.1 helix-turn-helix transcriptional regulator -
  M0N98_RS06555 (M0N98_01330) - 1640171..1641814 (-) 1644 WP_005842577.1 FAD-dependent protein -
  M0N98_RS06560 (M0N98_01331) - 1641820..1642470 (-) 651 WP_005842576.1 DUF1847 domain-containing protein -
  M0N98_RS06565 (M0N98_01332) radA 1642510..1643877 (-) 1368 WP_005842575.1 DNA repair protein RadA Machinery gene
  M0N98_RS06570 (M0N98_01333) thrA 1644405..1646837 (+) 2433 WP_016269963.1 bifunctional aspartate kinase/homoserine dehydrogenase I -
  M0N98_RS06575 (M0N98_01334) - 1646842..1648053 (+) 1212 WP_117694914.1 cofactor-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49901.49 Da        Isoelectric Point: 6.5871

>NTDB_id=685791 M0N98_RS06565 WP_005842575.1 1642510..1643877(-) (radA) [Phocaeicola vulgatus strain CL10T00C06]
MAKEKTVYVCTNCGQDSPKWVGKCPSCGAWNTYVEEIIRKEPANKRPVSGLESVKSKPVTLNDITGGDEPRIDMHDEELN
RVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLPDKKVLYISGEESARQLKLRADRIPHNSSDCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDHDGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEIERDTCMAGEVGLSGEI
RPVNRIEQRIGEAEKLGFKQILIPKHNLQGMDTSKLKIEIIPVRKVEEAFRALFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=685791 M0N98_RS06565 WP_005842575.1 1642510..1643877(-) (radA) [Phocaeicola vulgatus strain CL10T00C06]
ATGGCAAAGGAAAAGACTGTATATGTATGCACCAACTGTGGGCAGGATTCACCCAAATGGGTAGGGAAATGTCCGTCTTG
CGGTGCATGGAACACATACGTAGAAGAAATTATACGCAAGGAACCTGCAAACAAAAGACCGGTATCCGGCCTGGAATCCG
TAAAAAGCAAGCCTGTCACACTGAATGACATTACCGGAGGGGACGAACCTCGAATTGATATGCACGACGAAGAACTGAAC
CGGGTATTGGGAGGCGGTTTAGTACCGGGATCACTCGTTCTACTGGGCGGTGAACCGGGGATAGGCAAATCCACTTTGGT
GCTGCAAACCGTACTTCATCTGCCTGACAAAAAAGTATTGTATATATCGGGAGAAGAGAGTGCCCGGCAATTAAAACTGC
GTGCAGACCGTATCCCGCATAATTCTTCCGACTGCCTGATAGTCTGTGAAACTTCGTTGGAGCAGATTTACGTCCATATC
AAGAATACACGACCCGATTTAGTGATCATCGACTCTATTCAAACCATCTCAACCGAAACGATAGACTCTTCTCCCGGCAG
TTTGGTACAGGTACGTGAATGTTCCGCTTCTATTTTAAAATTTGCCAAAGAAACAAATACGCCGGTCATTCTGATCGGCC
ATATCAATAAAGAAGGAAGCATTGCCGGCCCCAAGGTACTGGAACATATTGTAGACACCGTATTGCAATTTGAAGGTGAC
CAACATTATATGTACCGCATTCTCCGCAGCATCAAGAACCGTTTCGGAAGCACCGCCGAACTGGGCATTTATGAAATGCG
CCAAAACGGTTTGCGCCAAGTGAGCAACCCGTCCGAACTGTTGCTTAGCCAAGACCATGACGGGATGAGCGGGGTTGCTA
TCGCCTCTGCCATAGAAGGAGTCCGCCCTTTCTTGATTGAAACACAGGCTTTAGTCAGTTCGGCAGTATATGGGAATCCG
CAACGTTCTGCCACCGGATTTGATTTACGACGTATGAACATGCTTCTGGCAGTACTTGAAAAACGGGTAGGATTCAAACT
GGCACAAAAAGATGTCTTTTTGAATATCGCAGGTGGATTGAAAGTGAATGATCCGGCCATCGACCTGTCTGTCATCAGTG
CCATTCTATCCAGCAATATGGATACGGAAATAGAACGTGACACCTGCATGGCGGGTGAAGTAGGACTGAGTGGTGAGATC
CGACCTGTAAACCGTATTGAGCAACGCATCGGAGAAGCAGAGAAATTAGGTTTCAAACAAATTCTTATACCGAAACATAA
TTTGCAAGGAATGGATACATCAAAATTAAAGATAGAAATCATTCCGGTAAGGAAGGTAGAAGAAGCGTTCCGGGCTTTGT
TTGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9HQL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.288

100

0.527
  radA Streptococcus mitis SK321

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

48.684

100

0.488
  radA Streptococcus pneumoniae D39

48.684

100

0.488
  radA Streptococcus pneumoniae R6

48.684

100

0.488
  radA Streptococcus pneumoniae TIGR4

48.684

100

0.488
  radA Streptococcus mitis NCTC 12261

48.684

100

0.488