Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M2J01_RS26045 Genome accession   NZ_CP096964
Coordinates   5575444..5576001 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain NY13936     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5570444..5581001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J01_RS26025 (M2J01_25965) pilR 5571720..5573057 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  M2J01_RS26030 (M2J01_25970) thiO 5573103..5574197 (-) 1095 WP_058160265.1 glycine oxidase ThiO -
  M2J01_RS26035 (M2J01_25975) - 5574332..5574841 (+) 510 WP_015503652.1 Tfp pilus assembly protein FimT/FimU -
  M2J01_RS26040 (M2J01_25980) - 5574947..5575453 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  M2J01_RS26045 (M2J01_25985) pilV 5575444..5576001 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  M2J01_RS26050 (M2J01_25990) pilW 5575998..5576822 (+) 825 WP_058160261.1 type 4a pilus minor pilin PilW -
  M2J01_RS26055 (M2J01_25995) pilX 5576819..5577406 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  M2J01_RS26060 (M2J01_26000) pilY1 5577418..5580909 (+) 3492 WP_033956576.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=685780 M2J01_RS26045 WP_003094697.1 5575444..5576001(+) (pilV) [Pseudomonas aeruginosa strain NY13936]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=685780 M2J01_RS26045 WP_003094697.1 5575444..5576001(+) (pilV) [Pseudomonas aeruginosa strain NY13936]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978