Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M2J01_RS20300 Genome accession   NZ_CP096964
Coordinates   4367459..4368094 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain NY13936     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4362459..4373094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J01_RS20270 (M2J01_20225) murB 4363551..4364576 (-) 1026 WP_058160225.1 UDP-N-acetylmuramate dehydrogenase -
  M2J01_RS20275 (M2J01_20230) - 4364573..4365037 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  M2J01_RS20280 (M2J01_20235) kdsB 4365037..4365801 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M2J01_RS20285 (M2J01_20240) - 4365801..4365986 (-) 186 WP_003091157.1 Trm112 family protein -
  M2J01_RS20290 (M2J01_20245) lpxK 4366024..4367022 (-) 999 WP_260543628.1 tetraacyldisaccharide 4'-kinase -
  M2J01_RS20295 (M2J01_20250) - 4367022..4367462 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  M2J01_RS20300 (M2J01_20255) exbB 4367459..4368094 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M2J01_RS20305 (M2J01_20260) comA 4368167..4370392 (-) 2226 WP_058160226.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M2J01_RS20310 (M2J01_20265) - 4370523..4371056 (+) 534 WP_270032169.1 DUF2062 domain-containing protein -
  M2J01_RS20315 (M2J01_20270) - 4371132..4372376 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=685771 M2J01_RS20300 WP_003091163.1 4367459..4368094(-) (exbB) [Pseudomonas aeruginosa strain NY13936]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=685771 M2J01_RS20300 WP_003091163.1 4367459..4368094(-) (exbB) [Pseudomonas aeruginosa strain NY13936]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81