Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | CCX78_RS00555 | Genome accession | NZ_AP017931 |
| Coordinates | 109694..110383 (-) | Length | 229 a.a. |
| NCBI ID | WP_056948148.1 | Uniprot ID | A0AAX0VAL7 |
| Organism | Latilactobacillus sakei strain LK-145 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 104694..115383
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCX78_RS00545 (LASAK_00096) | rpoC | 105300..108944 (+) | 3645 | WP_096584096.1 | DNA-directed RNA polymerase subunit beta' | - |
| CCX78_RS00550 (LASAK_00097) | - | 109118..109690 (+) | 573 | WP_056948146.1 | isochorismatase family protein | - |
| CCX78_RS00555 | comC | 109694..110383 (-) | 690 | WP_056948148.1 | prepilin peptidase | Machinery gene |
| CCX78_RS00560 (LASAK_00098) | rpsL | 110664..111077 (+) | 414 | WP_004270179.1 | 30S ribosomal protein S12 | - |
| CCX78_RS00565 (LASAK_00099) | rpsG | 111167..111637 (+) | 471 | WP_004270185.1 | 30S ribosomal protein S7 | - |
| CCX78_RS00570 (LASAK_00100) | fusA | 111733..113820 (+) | 2088 | WP_011375452.1 | elongation factor G | - |
| CCX78_RS00575 (LASAK_00101) | - | 114391..114942 (-) | 552 | WP_076632257.1 | cysteine hydrolase family protein | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 26176.47 Da Isoelectric Point: 7.1616
>NTDB_id=68577 CCX78_RS00555 WP_056948148.1 109694..110383(-) (comC) [Latilactobacillus sakei strain LK-145]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVIILLQTPQ
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVIILLQTPQ
Nucleotide
Download Length: 690 bp
>NTDB_id=68577 CCX78_RS00555 WP_056948148.1 109694..110383(-) (comC) [Latilactobacillus sakei strain LK-145]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTATGATTTATTACCACTAT
TCAGCTACTTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGCGCCCCTCTTCTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGTTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTCGGCCTTGAATCCGTTTTGCGAATTCTCTTAGCAGCCTG
TTTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCTTTTATTC
CCTATATATCGATGGGAGTGGTGATAATACTCCTACAAACACCACAATAA
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTATGATTTATTACCACTAT
TCAGCTACTTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGCGCCCCTCTTCTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGTTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTCGGCCTTGAATCCGTTTTGCGAATTCTCTTAGCAGCCTG
TTTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCTTTTATTC
CCTATATATCGATGGGAGTGGTGATAATACTCCTACAAACACCACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Latilactobacillus sakei subsp. sakei 23K |
98.253 |
100 |
0.983 |