Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M2J00_RS10110 Genome accession   NZ_CP096961
Coordinates   2171132..2171767 (+) Length   211 a.a.
NCBI ID   WP_270036066.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY13932     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166132..2176767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J00_RS10095 (M2J00_10085) - 2166838..2168082 (+) 1245 WP_003118085.1 lipoprotein-releasing ABC transporter permease subunit -
  M2J00_RS10100 (M2J00_10090) - 2168170..2168703 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  M2J00_RS10105 (M2J00_10095) comA 2168834..2171059 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M2J00_RS10110 (M2J00_10100) exbB 2171132..2171767 (+) 636 WP_270036066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M2J00_RS10115 (M2J00_10105) - 2171764..2172204 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  M2J00_RS10120 (M2J00_10110) lpxK 2172204..2173202 (+) 999 WP_023090452.1 tetraacyldisaccharide 4'-kinase -
  M2J00_RS10125 (M2J00_10115) - 2173240..2173425 (+) 186 WP_003091157.1 Trm112 family protein -
  M2J00_RS10130 (M2J00_10120) kdsB 2173425..2174189 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M2J00_RS10135 (M2J00_10125) - 2174189..2174653 (+) 465 WP_004350898.1 low molecular weight protein-tyrosine-phosphatase -
  M2J00_RS10140 (M2J00_10130) murB 2174650..2175669 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22876.03 Da        Isoelectric Point: 6.7278

>NTDB_id=685731 M2J00_RS10110 WP_270036066.1 2171132..2171767(+) (exbB) [Pseudomonas aeruginosa strain NY13932]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAGGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=685731 M2J00_RS10110 WP_270036066.1 2171132..2171767(+) (exbB) [Pseudomonas aeruginosa strain NY13932]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGGGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815