Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M2I99_RS27485 Genome accession   NZ_CP096960
Coordinates   5808446..5809003 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain NY11254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5803446..5814003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I99_RS27465 (M2I99_27400) pilR 5804722..5806059 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  M2I99_RS27470 (M2I99_27405) thiO 5806105..5807199 (-) 1095 WP_003094695.1 glycine oxidase ThiO -
  M2I99_RS27475 (M2I99_27410) - 5807334..5807843 (+) 510 WP_015503652.1 Tfp pilus assembly protein FimT/FimU -
  M2I99_RS27480 (M2I99_27415) - 5807949..5808455 (+) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  M2I99_RS27485 (M2I99_27420) pilV 5808446..5809003 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  M2I99_RS27490 (M2I99_27425) pilW 5809000..5809824 (+) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  M2I99_RS27495 (M2I99_27430) pilX 5809821..5810408 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  M2I99_RS27500 (M2I99_27435) pilY1 5810420..5813911 (+) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=685711 M2I99_RS27485 WP_003094697.1 5808446..5809003(+) (pilV) [Pseudomonas aeruginosa strain NY11254]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=685711 M2I99_RS27485 WP_003094697.1 5808446..5809003(+) (pilV) [Pseudomonas aeruginosa strain NY11254]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978