Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LEUCM_RS07205 Genome accession   NZ_AP017929
Coordinates   1436996..1437862 (+) Length   288 a.a.
NCBI ID   WP_025015773.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1431996..1442862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS07175 (LACBS_01420) - 1432861..1433763 (+) 903 WP_025015769.1 SGNH/GDSL hydrolase family protein -
  LEUCM_RS07180 (LACBS_01421) - 1433776..1434405 (+) 630 WP_011374699.1 YpmS family protein -
  LEUCM_RS07185 (LACBS_01422) - 1434416..1434640 (+) 225 WP_011374698.1 YozE family protein -
  LEUCM_RS07190 (LACBS_01423) lepB 1434665..1435195 (+) 531 WP_025015770.1 signal peptidase I -
  LEUCM_RS07195 (LACBS_01424) ylqF 1435327..1436178 (+) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  LEUCM_RS07200 (LACBS_01425) - 1436180..1436941 (+) 762 WP_025015772.1 ribonuclease HII -
  LEUCM_RS07205 (LACBS_01426) dprA 1436996..1437862 (+) 867 WP_025015773.1 DNA-processing protein DprA Machinery gene
  LEUCM_RS07210 (LACBS_01427) - 1437963..1438829 (+) 867 WP_056936410.1 NAD(P)H-binding protein -
  LEUCM_RS07215 (LACBS_01428) - 1438858..1439292 (+) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  LEUCM_RS07220 (LACBS_01429) topA 1439542..1441626 (+) 2085 WP_016265142.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31845.84 Da        Isoelectric Point: 8.8338

>NTDB_id=68568 LEUCM_RS07205 WP_025015773.1 1436996..1437862(+) (dprA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIEHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=68568 LEUCM_RS07205 WP_025015773.1 1436996..1437862(+) (dprA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGAACATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCACGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.611

100

0.986

Multiple sequence alignment