Detailed information NTG0685669

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OQ464_RS04890
• Genome accession: NZ_CP110859
• Coordinates: 1021002..1021994 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain TSW4848-W1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1016002..1026994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OQ464_RS04860 (OQ464_04860)	ispD	1016063..1016773 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OQ464_RS04865 (OQ464_04865)	ispF	1016773..1017252 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OQ464_RS04870 (OQ464_04870)	truD	1017249..1018298 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
OQ464_RS04875 (OQ464_04875)	surE	1018279..1019040 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OQ464_RS04880 (OQ464_04880)	pcm	1019034..1019660 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OQ464_RS04885 (OQ464_04885)	nlpD	1019845..1020939 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
OQ464_RS04890 (OQ464_04890)	rpoS	1021002..1021994 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
OQ464_RS04895 (OQ464_04895)	ygbN	1022088..1023452 (-)	1365	WP_000104441.1	GntP family transporter	-
OQ464_RS04900 (OQ464_04900)	ygbM	1023541..1024317 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
OQ464_RS04905 (OQ464_04905)	ygbL	1024322..1024960 (-)	639	WP_001278991.1	aldolase	-
OQ464_RS04910 (OQ464_04910)	otnK	1025052..1026218 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=685669 OQ464_RS04890 WP_000081588.1 1021002..1021994(+) (rpoS) [Escherichia coli strain TSW4848-W1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=685669 OQ464_RS04890 WP_000081588.1 1021002..1021994(+) (rpoS) [Escherichia coli strain TSW4848-W1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715