Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   OHI04_RS06305 Genome accession   NZ_CP110849
Coordinates   1260005..1261060 (-) Length   351 a.a.
NCBI ID   WP_029343951.1    Uniprot ID   -
Organism   Lactococcus lactis strain VHProbi V60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1255005..1266060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS06295 (OHI04_06295) trmFO 1256692..1258035 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OHI04_RS06300 (OHI04_06300) xerS 1258080..1259150 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  OHI04_RS06305 (OHI04_06305) xerS 1260005..1261060 (-) 1056 WP_029343951.1 tyrosine recombinase XerS Machinery gene
  OHI04_RS06310 (OHI04_06310) - 1261506..1261739 (+) 234 WP_270095119.1 hypothetical protein -
  OHI04_RS06315 (OHI04_06315) - 1261736..1261939 (-) 204 WP_029343953.1 hypothetical protein -
  OHI04_RS06320 (OHI04_06320) arsB 1261948..1263000 (-) 1053 WP_029343954.1 ACR3 family arsenite efflux transporter -
  OHI04_RS06325 (OHI04_06325) - 1263016..1264677 (-) 1662 WP_029343955.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40633.43 Da        Isoelectric Point: 9.8137

>NTDB_id=685595 OHI04_RS06305 WP_029343951.1 1260005..1261060(-) (xerS) [Lactococcus lactis strain VHProbi V60]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITNHANIKEITLKEMENVTKREL
EAFVLYERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDSNGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKSFLEFVEQDYEKSVSNRAKTSFKKNKKRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVSVMRKEGKKDVVP
IAHFSHKYITDYYNARSSITTEIQALFITDYNQKIRKISNASINKLVAKYSEAYKIRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=685595 OHI04_RS06305 WP_029343951.1 1260005..1261060(-) (xerS) [Lactococcus lactis strain VHProbi V60]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACTGTACCGCTGAGTATTGCCTCTATTTACTCTTACTGCTTGGAGTTTAGGAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAACCATGCTAACATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTTACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCATTAAATCGAAC
AATTGCTGCAATAAAGAGTCTATATAATTATCTTTGCGAACAAACCGAAGATAGTAATGGCAATACTTACATGACTAGAA
ATGTTAGCCGTTTAATACATATCCGAAAAAAAAGCGAAACCTTGCATTACCGTGCGGCTCAACTTGAAGGGAAACTCTTT
TTAGGTGATGAAACCAAATCCTTTTTAGAATTTGTTGAGCAAGACTATGAAAAGTCTGTCAGTAATCGTGCGAAAACAAG
TTTCAAAAAAAATAAAAAAAGAGATTTAGCCATACTAAGCCTCTTTTTATCTTCTGGATTACGCTGTGCGGAACTTGTAG
GGATCAATCTCAATGATTTAAACCTTGAAACTGGAAAAGTAAGTGTTATGCGAAAAGAAGGAAAGAAAGATGTTGTTCCA
ATTGCCCACTTTTCACACAAATATATAACTGATTATTATAATGCAAGAAGTAGCATAACCACAGAGATACAGGCCTTATT
CATCACAGATTACAACCAAAAAATAAGAAAAATATCAAATGCTTCGATAAATAAGCTCGTAGCGAAGTATTCAGAAGCCT
ATAAAATTCGAGTGACACCTCATACACTAAGGCATACATTCGCAACAAGACTTTATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAATCAACTAGGCCATTCCTCAACTAAACCTACTGAGTTATATACCCACATCGTCAGCGCTGAAGCTAAAGATGC
GTTAAGAAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(185-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.559

99.43

0.453