Detailed information NTG0685461

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SLV14N_RS23695
• Genome accession: NZ_CP110836
• Coordinates: 5389538..5390539 (+)
• Length: 333 a.a.
• NCBI ID: WP_127151536.1
• Uniprot ID: -
• Organism: Streptomyces sp. Je 1-4 4N24
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5384538..5395539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SLV14N_RS23665 (SLV14N_004701)	-	5385167..5385664 (-)	498	WP_018091188.1	MarR family winged helix-turn-helix transcriptional regulator	-
SLV14N_RS23670 (SLV14N_004702)	-	5385828..5386877 (-)	1050	WP_263270958.1	questin oxidase family protein	-
SLV14N_RS23675 (SLV14N_004703)	-	5387087..5387650 (+)	564	WP_263270959.1	pyridoxamine 5'-phosphate oxidase family protein	-
SLV14N_RS23680 (SLV14N_004704)	-	5387666..5387869 (-)	204	WP_263270960.1	hypothetical protein	-
SLV14N_RS23685 (SLV14N_004705)	-	5387968..5388531 (-)	564	WP_263270961.1	hypothetical protein	-
SLV14N_RS23690 (SLV14N_004706)	-	5388660..5389352 (-)	693	WP_263270962.1	GNAT family N-acetyltransferase	-
SLV14N_RS23695 (SLV14N_004707)	rpoS	5389538..5390539 (+)	1002	WP_127151536.1	RNA polymerase sigma factor RpoD/SigA	Regulator
SLV14N_RS23700 (SLV14N_004708)	-	5390779..5391561 (+)	783	WP_042156164.1	DeoR/GlpR family DNA-binding transcription regulator	-
SLV14N_RS23705 (SLV14N_004709)	pfkB	5391558..5392505 (+)	948	WP_263270963.1	1-phosphofructokinase	-
SLV14N_RS23710 (SLV14N_004710)	-	5392683..5394857 (+)	2175	WP_263270964.1	fructose-specific PTS transporter subunit EIIC	-
SLV14N_RS23715 (SLV14N_004711)	-	5395267..5395452 (+)	186	WP_263270965.1	hypothetical protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 36857.33 Da
• Isoelectric Point: 4.8182

>NTDB_id=685461 SLV14N_RS23695 WP_127151536.1 5389538..5390539(+) (rpoS) [Streptomyces sp. Je 1-4 4N24]
MATRAVARRQESSSGSDGATSVRAIGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQILDGEVADGNAA
GAGREELERLVEEGAKAKDIFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEVAGELGSTPARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDHRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMAHDTGFDAAA

Nucleotide

• Length: 1002 bp

>NTDB_id=685461 SLV14N_RS23695 WP_127151536.1 5389538..5390539(+) (rpoS) [Streptomyces sp. Je 1-4 4N24]
ATGGCAACCCGTGCCGTCGCCCGCCGTCAGGAAAGCAGCAGCGGTTCCGACGGGGCCACCAGTGTTCGCGCCATAGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCACTGCTCGACGCGGCCAAGGAGG
TCGAGCTGTCCCAGACCATCGAGGCGGGCGTCTACGCCCAGCAGATCCTGGACGGCGAGGTCGCCGACGGCAATGCCGCG
GGCGCCGGCCGCGAGGAGCTGGAAAGGCTGGTCGAGGAGGGCGCCAAGGCCAAGGACATCTTCATCCGTTCCAATCTCCG
TCTGGTGGTGGCGGTCGCCCGCCGCTACCCGCGCGCCGGGCTGCCTCTGCTGGACCTGATCCAGGAGGGCAACGCCGGTC
TGGTGCGCGCCGTGGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTATGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGGCTGCCCGTGCACCTCGTCGAGGAGCTGGGCCGGATACGCCG
GGTGCAGCGCGAGTTCAACCGTGAGAACGGCCGTGACCCGGAGCCGGCGGAGGTCGCCGGCGAGCTGGGCTCCACGCCCG
CCCGCGTCACCGACGTACTCGACTGGGCGCGCGACCCGGTCAGCCTCAACATGTCCGTGGACGACGACGGCGACACCCAG
TTCGGTGATCTGCTGGAGGACACCTCCGCGGCCTCGCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGA
GGACCTGATCGACCGTCTCGACCACCGCACCGCTTCGATCATCAAGGCCCGCTACGGCATCGAGGACGGCCGCGAGCGCA
CGCTGACCGAGGTCGGCAAGCAGCACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCATGCGCTGCTGGAGCTG
AAGCGGATGGCGCATGACACGGGATTCGACGCGGCCGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (101-170)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (33-66)

• Sigma-70 region 3 (Sigma70_r3) (180-256)

• Sigma-70, region 4 (Sigma70_r4) (270-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.867	90.39	0.36