Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OOL18_RS09365 Genome accession   NZ_CP110664
Coordinates   1954247..1955236 (+) Length   329 a.a.
NCBI ID   WP_005613250.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1949247..1960236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS09345 - 1949839..1950807 (-) 969 WP_265410783.1 mannose/fructose/sorbose PTS transporter subunit IIA -
  OOL18_RS09350 - 1950997..1952346 (-) 1350 WP_005618129.1 GntP family permease -
  OOL18_RS09355 - 1952524..1953039 (+) 516 WP_005618131.1 gluconokinase -
  OOL18_RS09360 gntR 1953111..1954109 (-) 999 WP_265410784.1 gluconate operon transcriptional repressor GntR -
  OOL18_RS09365 cytR 1954247..1955236 (+) 990 WP_005613250.1 substrate-binding domain-containing protein Regulator
  OOL18_RS09370 rbsD 1955357..1955776 (+) 420 WP_005602428.1 D-ribose pyranase -
  OOL18_RS09375 rbsA 1955789..1957270 (+) 1482 WP_265410785.1 ribose ABC transporter ATP-binding protein RbsA -
  OOL18_RS09380 rbsC 1957327..1958286 (+) 960 WP_265410786.1 ribose ABC transporter permease -
  OOL18_RS09385 rbsB 1958310..1959182 (+) 873 WP_005602434.1 ribose ABC transporter substrate-binding protein RbsB -
  OOL18_RS09390 rbsK 1959255..1960166 (+) 912 WP_039709362.1 ribokinase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36902.24 Da        Isoelectric Point: 6.7245

>NTDB_id=685242 OOL18_RS09365 WP_005613250.1 1954247..1955236(+) (cytR) [Actinobacillus pleuropneumoniae strain AP_123]
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCERHNYHLILVNTDGNSTNLAQHLARLLRKQVDGLLLMCSEPQDLDESVMANIHLPMVVIDWWQQALKADNVHENS
ELGGYLATKALIDAGYTEIAVITGEQSKSHTLNRLQGYKRAILEANLPIRPEWIVEGHFDYQAGLEYASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLAPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF

Nucleotide


Download         Length: 990 bp        

>NTDB_id=685242 OOL18_RS09365 WP_005613250.1 1954247..1955236(+) (cytR) [Actinobacillus pleuropneumoniae strain AP_123]
ATGGCAACAATGAAAGATATAGCTCGGATTGCGGGCGTTTCAACTTCCACCGTTTCCCATGTGATCAATAACTCACGTTT
TGTGAGTGACGAAATTCGTCAGCGGATTGAAAAAGTGGTGGCGGAACTCAATTACACGCCTTCGTTAGTCGCTCGCAGTC
TGAAAGTGAAAGAAACCAATACGATCGGTATGTTGGTAACCACCAGTAGTAACCCGTTTTTTGCGGAAGTAGTACGTCAC
GTCGAACGTTATTGTGAACGCCATAACTATCATTTAATTTTAGTGAATACTGACGGTAACAGTACCAATTTAGCACAACA
TTTAGCCCGCTTGTTACGCAAACAAGTGGACGGTTTATTATTAATGTGTTCCGAGCCACAAGATTTGGACGAAAGTGTGA
TGGCGAATATTCACTTGCCAATGGTGGTGATTGACTGGTGGCAACAGGCATTGAAAGCGGATAACGTACACGAAAATTCG
GAATTAGGTGGTTATCTTGCAACAAAAGCGTTAATTGATGCCGGTTATACCGAGATTGCGGTAATTACCGGTGAGCAATC
GAAATCGCATACATTAAACCGTTTACAAGGTTACAAGCGGGCGATTCTAGAGGCAAATTTGCCAATTCGTCCGGAATGGA
TTGTGGAAGGTCACTTCGATTATCAAGCCGGTTTGGAATATGCAAGCCGGTTATTGGCACTAAACTCTCGCCCGCAAGCG
ATTTTTGCGATGAGCGATAGCATTGCAATCGGTGTATATCAAGCCGCTTGGCAAGCCGGTTTACGTATTCCGCAAGATAT
TGCGGTGATCGGTTACGATAATATCGAATTGGCACAATATCTCGCTCCTCCGCTTTCTACGATTCATCAACCCAAAGCCC
GTTTGGCGAAGAATGCGGTGGAGCAGTTGATCGCCCGTATTCATCAGCCGGATAAAGCTTATCAAGAAATCGAACTTACT
CCCGAACTTGTCGTTCGCCGTTCTTTTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.061

100

0.362