Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OOL18_RS06215 Genome accession   NZ_CP110664
Coordinates   1342184..1343992 (-) Length   602 a.a.
NCBI ID   WP_005597995.1    Uniprot ID   A0ABM6X3N5
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337184..1348992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS06190 nagZ 1337186..1338223 (+) 1038 WP_043993299.1 beta-N-acetylhexosaminidase -
  OOL18_RS06195 rlmC 1338304..1339479 (+) 1176 WP_005601582.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  OOL18_RS06200 eno 1339686..1340996 (+) 1311 WP_005597992.1 phosphopyruvate hydratase -
  OOL18_RS06205 - 1341072..1341701 (+) 630 WP_005597993.1 NUDIX hydrolase -
  OOL18_RS06210 - 1341715..1342125 (+) 411 WP_005597994.1 DUF2251 domain-containing protein -
  OOL18_RS06215 recQ 1342184..1343992 (-) 1809 WP_005597995.1 ATP-dependent DNA helicase RecQ Machinery gene
  OOL18_RS06220 cyaY 1344077..1344382 (-) 306 WP_005608334.1 iron donor protein CyaY -
  OOL18_RS06225 - 1344391..1344747 (-) 357 WP_265410673.1 glycosyltransferase -
  OOL18_RS06230 - 1344751..1345053 (-) 303 WP_005612537.1 glycosyltransferase family 25 protein -
  OOL18_RS06235 tsaD 1345094..1346137 (-) 1044 WP_005598001.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  OOL18_RS06240 - 1346229..1347005 (-) 777 WP_005598002.1 outer membrane protein assembly factor BamD -
  OOL18_RS06245 rluD 1347158..1348135 (+) 978 WP_005598003.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OOL18_RS06250 - 1348179..1348892 (-) 714 WP_005601594.1 YwiC-like family protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68459.42 Da        Isoelectric Point: 7.6556

>NTDB_id=685229 OOL18_RS06215 WP_005597995.1 1342184..1343992(-) (recQ) [Actinobacillus pleuropneumoniae strain AP_123]
MQLSQTAAKDVLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKDQVDQL
LTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEKVMTQGFFHFISLCKISLIAVDEAHCVSQWGHDFRPEYTLL
GNLRDTFPNVPLMALTATADPTTRHDILQHLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFISKQQGKSGIVYCNS
RKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETG
RAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHKLQAIGAFAESQTCRRLVLLNYFGESRQEPCKNCDICLD
PPRKYDGTLDAQKVMSVIYRTGQTFGAHHVIGVLRGLNNQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQN
IVNHSALQLTEEARPVLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFLRKQIADKENIPPYVVFNDATLQE
MAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIREHCNNRQ

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=685229 OOL18_RS06215 WP_005597995.1 1342184..1343992(-) (recQ) [Actinobacillus pleuropneumoniae strain AP_123]
ATGCAATTATCTCAAACCGCCGCCAAAGACGTATTGAATAATGTCTTCGGTTATCAATCTTTTCGTCACGGACAACAAGA
AGTGATCGATTCGGTTCTGGCGGGTAGAGATTGTTTAGTCATTATGACCACCGGCGGCGGTAAGTCGCTTTGTTACCAAG
TACCGGCGCTTTGCTTAGACGGCATTACGCTAGTGATTTCTCCGCTGATTTCTTTGATGAAAGATCAGGTTGATCAGTTG
CTTACCAATGGTATCGAAGCCGGCTTTTTAAATTCCACGCAAACTTTTGAAGAACAACAGCTTGTCGAACAGAAAGCACT
TTCCGGTCAGTTGAAATTACTTTATCTCTCGCCGGAAAAAGTAATGACTCAAGGCTTTTTCCATTTTATTTCGTTATGCA
AAATTAGCCTGATTGCAGTCGATGAAGCGCATTGCGTTTCGCAATGGGGGCATGATTTCCGTCCGGAATACACTTTATTA
GGCAATTTACGTGATACCTTTCCGAATGTGCCGCTGATGGCATTAACGGCAACGGCAGATCCTACGACTCGCCACGATAT
TCTGCAGCACCTGCGCTTAACCGATCCGCATACCTATTTAGGCAGTTTTGATCGCCCGAATATTCGCTATACGGTACAAG
AAAAATTTAAGCCGGTGGAACAGTTGGCAAAATTCATCAGTAAACAGCAGGGCAAGAGCGGTATCGTTTATTGCAATAGC
CGTAAAAAAGTGGAAGAAATTACCGAAAAATTGGCGTCACGTAAAATTTCAGTAATGGGTTACCACGCCGGTATGTCGGT
TCAGCAACGTGAAACGGTTCAAAATGCGTTTCAGCGAGATAATATTCAAGTTGTGGTGGCTACTATTGCTTTCGGGATGG
GGATTAATAAATCAAACGTGCGTTTTGTGGTGCATTTCGATTTGCCACGCAGTATCGAATCCTACTATCAAGAAACCGGG
CGTGCCGGACGTGATGATTTACCATCTGAAGCGGTGTTATTTTATGATCCCGCCGATTATGCGTGGTTACAGAAAGTATT
ATTGGAAGAGCCGGAAAGCGAACAGCGCGATATAAAGCAACATAAATTACAAGCCATCGGTGCTTTTGCCGAATCGCAAA
CCTGCCGCCGTTTAGTGCTATTGAATTATTTCGGCGAATCACGCCAAGAACCCTGTAAAAACTGTGATATTTGCTTAGAT
CCGCCTCGTAAATATGACGGTACGTTAGATGCGCAAAAAGTGATGTCGGTTATTTACCGTACCGGTCAAACTTTTGGCGC
ACACCATGTGATTGGCGTATTACGAGGGTTAAATAACCAAAAAATTCGCCAGTTTAATCATGATCAGCTTTCGGTGTACG
GTATCGGTAAAGAGCAGAGCCAAGATTATTGGTTAAGTATTATTCGTCAATTAATTCATTTGGGTTTAATTCGTCAAAAT
ATCGTGAACCATTCGGCATTACAGCTGACGGAAGAAGCTCGTCCGGTGCTGCGTTCGGAGAAAAAACTTGAATTGGCAAT
GCCTCGCTTAACCTTCTCGGCAACGGCTTATGTACAGAAACAGAGTTCGGTTCGTTACGATAAAGACTTATTTGCTCGCC
TGCGTTTTCTACGTAAACAAATTGCCGATAAAGAAAATATCCCGCCTTATGTGGTATTCAACGATGCGACTTTGCAGGAA
ATGGCGGAATTTTTACCGCTTAGCGAAGTGGAAATGTTGGATATTAATGGGGTCGGAGAACGTAAACTGGAACGTTTCGG
CGGTGCGTTTTTAAGCCTGATTCGAGAGCATTGTAATAATCGCCAATAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(528-594)

RecQ zinc-binding (RecQ_Zn_bind)

(339-399)

RQC domain (RQC)

(401-509)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

DEAD/DEAH box helicase (DEAD)

(24-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

99.003

0.39