Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OOL18_RS06175 Genome accession   NZ_CP110664
Coordinates   1334882..1335514 (+) Length   210 a.a.
NCBI ID   WP_005601574.1    Uniprot ID   B3GXZ4
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329882..1340514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS06160 - 1330053..1330253 (-) 201 WP_005620223.1 hypothetical protein -
  OOL18_RS06165 purT 1330947..1332128 (-) 1182 WP_005610416.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OOL18_RS06170 plsB 1332251..1334725 (-) 2475 WP_265410672.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  OOL18_RS06175 dinR/lexA 1334882..1335514 (+) 633 WP_005601574.1 transcriptional repressor LexA Regulator
  OOL18_RS06180 mutH 1335574..1336254 (+) 681 WP_005610420.1 DNA mismatch repair endonuclease MutH -
  OOL18_RS06185 - 1336340..1337071 (+) 732 WP_005597990.1 TerC family protein -
  OOL18_RS06190 nagZ 1337186..1338223 (+) 1038 WP_043993299.1 beta-N-acetylhexosaminidase -
  OOL18_RS06195 rlmC 1338304..1339479 (+) 1176 WP_005601582.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23354.73 Da        Isoelectric Point: 5.8460

>NTDB_id=685228 OOL18_RS06175 WP_005601574.1 1334882..1335514(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain AP_123]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIVVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=685228 OOL18_RS06175 WP_005601574.1 1334882..1335514(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain AP_123]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTCGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACCCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGACGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACGGTAAAACGCTTGGAGAAAAAAGGCGACCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTGTTGT
TGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAATGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(85-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3GXZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.379

98.095

0.367