Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OOL18_RS04030 Genome accession   NZ_CP110664
Coordinates   859048..859995 (+) Length   315 a.a.
NCBI ID   WP_005597088.1    Uniprot ID   A0ABM6X1S0
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 854048..864995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS04005 lysC 854206..855558 (+) 1353 WP_005597077.1 lysine-sensitive aspartokinase 3 -
  OOL18_RS04010 nrdR 855684..856133 (-) 450 WP_005597079.1 transcriptional regulator NrdR -
  OOL18_RS04015 - 856133..856420 (-) 288 WP_005600927.1 YcgL domain-containing protein -
  OOL18_RS04020 - 856410..857873 (-) 1464 WP_005620833.1 replicative DNA helicase -
  OOL18_RS04025 - 858053..858961 (+) 909 WP_005597086.1 siderophore ABC transporter substrate-binding protein -
  OOL18_RS04030 ceuB 859048..859995 (+) 948 WP_005597088.1 ABC transporter permease Machinery gene
  OOL18_RS04035 - 859995..860936 (+) 942 WP_005597090.1 iron chelate uptake ABC transporter family permease subunit -
  OOL18_RS04040 - 860938..861696 (+) 759 WP_005604228.1 ABC transporter ATP-binding protein -
  OOL18_RS04045 - 861885..862565 (+) 681 WP_005597094.1 TIGR00153 family protein -
  OOL18_RS04050 - 862575..863837 (+) 1263 WP_005604231.1 inorganic phosphate transporter -
  OOL18_RS04055 - 863901..864506 (+) 606 WP_005597098.1 TIGR04211 family SH3 domain-containing protein -
  OOL18_RS04060 - 864560..864787 (-) 228 WP_005600938.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34340.51 Da        Isoelectric Point: 9.6890

>NTDB_id=685214 OOL18_RS04030 WP_005597088.1 859048..859995(+) (ceuB) [Actinobacillus pleuropneumoniae strain AP_123]
MQKLTALNFLFLVLLFLLSISVGVADFQWRDLFTHTEQLELLFISRLPRTLAVVLVGATLGIAGMVLQIVLKNRFIEPSM
IGASQSAAIGILIVSLMFPATPLIMKMSFATLSALIGMGIFMLLLRRLPPHQKLMVPLIGIVFGNIIEAITTFVAYETDS
LQLLSVWFSGDFSGILAGRYELLWLTAGLAVLVYIMAEQLSIAGLGQNISTSLGINYRQMTWFALIVVAMITAVVVVTVG
QIPFIGLVVPNIISRLAGDRLRQNLPSVALLGANLVLLCDIIGRVVNAPYEVPISTIFGICGTVVFLYLLFRGKK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=685214 OOL18_RS04030 WP_005597088.1 859048..859995(+) (ceuB) [Actinobacillus pleuropneumoniae strain AP_123]
ATGCAAAAACTAACCGCTTTAAATTTTTTATTTCTGGTCTTACTTTTTCTATTGAGTATTTCAGTAGGGGTTGCCGATTT
CCAATGGAGAGATCTTTTCACTCATACCGAACAGCTTGAATTACTTTTTATCAGTCGATTACCCAGAACGCTTGCCGTTG
TACTTGTCGGTGCCACACTTGGTATTGCCGGAATGGTACTTCAAATCGTACTTAAAAATCGTTTTATTGAACCCAGTATG
ATTGGAGCCAGCCAAAGTGCGGCAATCGGTATCTTAATTGTCAGCTTAATGTTTCCTGCCACACCGCTTATTATGAAAAT
GTCCTTTGCAACGTTAAGCGCATTAATCGGTATGGGGATTTTTATGCTGCTGCTTCGTCGATTACCCCCCCATCAAAAGT
TGATGGTTCCGCTCATCGGAATCGTATTCGGTAATATTATTGAGGCCATTACTACTTTCGTCGCATACGAAACCGACTCT
TTACAATTATTATCCGTTTGGTTCTCAGGCGACTTTTCCGGTATCTTAGCAGGGCGTTACGAATTATTATGGCTAACAGC
CGGGCTGGCCGTCCTTGTATATATTATGGCGGAACAACTCAGCATTGCCGGATTAGGTCAAAATATCAGTACCAGTTTAG
GTATCAATTACCGCCAAATGACTTGGTTTGCGTTAATTGTGGTTGCAATGATTACCGCGGTGGTTGTAGTTACGGTCGGA
CAAATTCCGTTTATCGGATTAGTTGTACCTAATATCATTTCTCGTTTAGCCGGTGACCGTTTACGCCAGAATTTACCTTC
AGTAGCATTACTCGGCGCGAACTTAGTCTTACTTTGTGACATTATCGGACGTGTGGTCAATGCGCCTTATGAAGTACCTA
TCTCGACCATCTTCGGGATTTGCGGAACGGTTGTTTTTCTCTATTTACTGTTTAGAGGGAAAAAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(12-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.342

100

0.375