Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   OOZ27_RS22415 Genome accession   NZ_CP110634
Coordinates   4224092..4224781 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain MG-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4219092..4229781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS22395 (OOZ27_22395) yxeA 4219998..4220345 (-) 348 WP_015715011.1 YxeA family protein -
  OOZ27_RS22400 (OOZ27_22400) yxdM 4220359..4222227 (-) 1869 WP_015715012.1 ABC transporter permease YxdM -
  OOZ27_RS22405 (OOZ27_22405) yxdL 4222202..4222975 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  OOZ27_RS22410 (OOZ27_22410) yxdK 4223118..4224095 (-) 978 WP_015715013.1 two-component system sensor histidine kinase YxdK -
  OOZ27_RS22415 (OOZ27_22415) braR 4224092..4224781 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  OOZ27_RS22420 (OOZ27_22420) iolJ 4224889..4225761 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  OOZ27_RS22425 (OOZ27_22425) iolI 4225782..4226618 (-) 837 WP_015715014.1 2-keto-myo-inositol isomerase -
  OOZ27_RS22430 (OOZ27_22430) iolH 4226704..4227573 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  OOZ27_RS22435 (OOZ27_22435) iolG 4227593..4228627 (-) 1035 WP_015715015.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=685189 OOZ27_RS22415 WP_003243527.1 4224092..4224781(-) (braR) [Bacillus subtilis strain MG-1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=685189 OOZ27_RS22415 WP_003243527.1 4224092..4224781(-) (braR) [Bacillus subtilis strain MG-1]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTCCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406