Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   OOZ27_RS20850 Genome accession   NZ_CP110634
Coordinates   3915341..3916474 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain MG-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3910341..3921474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS20810 (OOZ27_20810) ywnA 3910501..3910902 (-) 402 WP_015714861.1 Rrf2 family transcriptional regulator -
  OOZ27_RS20815 (OOZ27_20815) ureC 3911037..3912746 (-) 1710 WP_015714862.1 urease subunit alpha -
  OOZ27_RS20820 (OOZ27_20820) ureB 3912743..3913117 (-) 375 WP_003227726.1 urease subunit beta -
  OOZ27_RS20825 (OOZ27_20825) ureA 3913114..3913431 (-) 318 WP_003227724.1 urease subunit gamma -
  OOZ27_RS20830 (OOZ27_20830) - 3913626..3913784 (-) 159 WP_124059325.1 hypothetical protein -
  OOZ27_RS23135 - 3914020..3914232 (-) 213 Protein_4049 urea ABC transporter substrate-binding protein -
  OOZ27_RS20840 (OOZ27_20840) csbD 3914445..3914633 (-) 189 WP_015251021.1 stress response protein CsbD -
  OOZ27_RS20845 (OOZ27_20845) - 3914706..3915185 (-) 480 WP_003244390.1 hypothetical protein -
  OOZ27_RS20850 (OOZ27_20850) rapC 3915341..3916474 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  OOZ27_RS20855 (OOZ27_20855) moaA 3916666..3917691 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  OOZ27_RS20860 (OOZ27_20860) fdhD 3917707..3918495 (-) 789 WP_015714864.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  OOZ27_RS20865 (OOZ27_20865) - 3918741..3918902 (-) 162 WP_015714865.1 hypothetical protein -
  OOZ27_RS20870 (OOZ27_20870) ywmD 3918997..3919671 (-) 675 WP_003243553.1 vWA domain-containing protein -
  OOZ27_RS20875 (OOZ27_20875) - 3919724..3919864 (-) 141 WP_014478246.1 hypothetical protein -
  OOZ27_RS20880 (OOZ27_20880) ywmC 3919995..3920678 (-) 684 WP_003227700.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=685182 OOZ27_RS20850 WP_003227715.1 3915341..3916474(-) (rapC) [Bacillus subtilis strain MG-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=685182 OOZ27_RS20850 WP_003227715.1 3915341..3916474(-) (rapC) [Bacillus subtilis strain MG-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGTGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424