Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   OOZ27_RS12965 Genome accession   NZ_CP110634
Coordinates   2444969..2446459 (-) Length   496 a.a.
NCBI ID   WP_015251799.1    Uniprot ID   -
Organism   Bacillus subtilis strain MG-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2439969..2451459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS12935 (OOZ27_12935) gudB 2440116..2441390 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  OOZ27_RS12940 (OOZ27_12940) mecB 2441546..2442130 (-) 585 WP_015714183.1 genetic competence negative regulator -
  OOZ27_RS12945 (OOZ27_12945) ypbG 2442289..2443068 (-) 780 WP_015251802.1 metallophosphoesterase -
  OOZ27_RS12950 (OOZ27_12950) ypbF 2443155..2443598 (-) 444 WP_003230531.1 YpbF family protein -
  OOZ27_RS12955 (OOZ27_12955) claE 2443661..2444389 (-) 729 WP_015714184.1 LysM peptidoglycan-binding domain-containing protein -
  OOZ27_RS12960 (OOZ27_12960) ypbD 2444340..2444942 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  OOZ27_RS12965 (OOZ27_12965) recS 2444969..2446459 (-) 1491 WP_015251799.1 RecQ family ATP-dependent DNA helicase Machinery gene
  OOZ27_RS12970 (OOZ27_12970) gmmB 2446452..2447510 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  OOZ27_RS12975 (OOZ27_12975) fdxA 2447776..2448024 (+) 249 WP_003225461.1 ferredoxin -
  OOZ27_RS12980 (OOZ27_12980) fmnP 2448064..2448636 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  OOZ27_RS12985 (OOZ27_12985) serA 2449133..2450710 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56509.05 Da        Isoelectric Point: 6.4518

>NTDB_id=685129 OOZ27_RS12965 WP_015251799.1 2444969..2446459(-) (recS) [Bacillus subtilis strain MG-1]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=685129 OOZ27_RS12965 WP_015251799.1 2444969..2446459(-) (recS) [Bacillus subtilis strain MG-1]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGATGGCTGTTTAAGGCAGGCACTATTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.798

100

0.998