Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   OOZ27_RS06025 Genome accession   NZ_CP110634
Coordinates   1115408..1118299 (+) Length   963 a.a.
NCBI ID   WP_074794269.1    Uniprot ID   -
Organism   Bacillus subtilis strain MG-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1110408..1123299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS06000 (OOZ27_06000) yhaR 1110822..1111589 (+) 768 WP_015715595.1 enoyl-CoA hydratase -
  OOZ27_RS06005 (OOZ27_06005) yhzD 1111610..1111795 (-) 186 WP_015715596.1 YhzD family protein -
  OOZ27_RS06010 (OOZ27_06010) yhaQ 1111922..1112818 (+) 897 WP_064911661.1 ABC transporter ATP-binding protein -
  OOZ27_RS06015 (OOZ27_06015) yhaP 1112811..1114070 (+) 1260 WP_064911662.1 ABC transporter permease -
  OOZ27_RS06020 (OOZ27_06020) yhaO 1114177..1115403 (+) 1227 WP_144460127.1 metallophosphoesterase family protein -
  OOZ27_RS06025 (OOZ27_06025) sbcE 1115408..1118299 (+) 2892 WP_074794269.1 DNA repair/recombination ATPase SbcE Machinery gene
  OOZ27_RS06030 (OOZ27_06030) yhaM 1118373..1119317 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  OOZ27_RS06035 (OOZ27_06035) yhaL 1119442..1119654 (+) 213 WP_003233252.1 sporulation protein YhaL -
  OOZ27_RS06040 (OOZ27_06040) prsA 1119695..1120579 (-) 885 WP_015715600.1 peptidylprolyl isomerase -
  OOZ27_RS06045 (OOZ27_06045) yhzE1 1120739..1120825 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  OOZ27_RS06050 (OOZ27_06050) yhzE2 1120950..1121036 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  OOZ27_RS06055 (OOZ27_06055) - 1121089..1121271 (-) 183 WP_024571667.1 hypothetical protein -
  OOZ27_RS06060 (OOZ27_06060) yhaJ 1121379..1121897 (-) 519 WP_015715601.1 DUF3267 domain-containing protein -
  OOZ27_RS06065 (OOZ27_06065) yhaI 1122105..1122446 (+) 342 WP_009966921.1 YhaI family protein -
  OOZ27_RS06070 (OOZ27_06070) scoC 1122443..1123054 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111093.16 Da        Isoelectric Point: 6.1610

>NTDB_id=685078 OOZ27_RS06025 WP_074794269.1 1115408..1118299(+) (sbcE) [Bacillus subtilis strain MG-1]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEESGYHQLLGEKRMLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDTEKAVRAASSAILEDSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLLPVNQSQ
DISISDALHTLRINIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGHPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMIKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMRGDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQDGSMLPFQLDDSFVHFDQERLKRVLHVLYDLSKGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=685078 OOZ27_RS06025 WP_074794269.1 1115408..1118299(+) (sbcE) [Bacillus subtilis strain MG-1]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCCAATCGGACCTTTCACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGAGGAATCGGGCTATCATCAGCTTCTCGGGGAAAAAC
GAATGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAACCATTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACATGCAGGACAATT
TCCTGCTGACGGCCTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAACTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACATTTGAA
CTTGCCCGGCAAGAGCTGGAAGACACGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAGATAGCCAAAGAAA
AGATAAAGAAGCTGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTACTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAATCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCTTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGATAAACATTGAACGTGAAAAAGAAATCGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAGCTTGAGCAAGAAATACAATATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGACACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGATCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTAAAAGAAACGGCTAAAAAATGGGCCTCGATACAAATGATCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTAGAGACGGCAGGAGAATTCTTCCGCCCCCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCGTGGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACGTGTGAACAGCTGTATACAGCGATCCGATTTGCTCTGGCCGTTACGCGCCAGGATGGGTCAATGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CCAAAGGTGGTAGGCAGATTTTGTATTTTACATGTCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.235

100

0.982