Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M2J78_RS09990 Genome accession   NZ_CP096912
Coordinates   2151469..2152104 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain NY7770     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2146469..2157104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J78_RS09975 (M2J78_09965) - 2147187..2148431 (+) 1245 WP_044727054.1 lipoprotein-releasing ABC transporter permease subunit -
  M2J78_RS09980 (M2J78_09970) - 2148507..2149040 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  M2J78_RS09985 (M2J78_09975) comA 2149171..2151396 (+) 2226 WP_023100928.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M2J78_RS09990 (M2J78_09980) exbB 2151469..2152104 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M2J78_RS09995 (M2J78_09985) - 2152101..2152541 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  M2J78_RS10000 (M2J78_09990) lpxK 2152541..2153539 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  M2J78_RS10005 (M2J78_09995) - 2153577..2153762 (+) 186 WP_003091157.1 Trm112 family protein -
  M2J78_RS10010 (M2J78_10000) kdsB 2153762..2154526 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M2J78_RS10015 (M2J78_10005) - 2154526..2154990 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  M2J78_RS10020 (M2J78_10010) murB 2154987..2156006 (+) 1020 WP_021265002.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=685078 M2J78_RS09990 WP_003091163.1 2151469..2152104(+) (exbB) [Pseudomonas aeruginosa strain NY7770]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=685078 M2J78_RS09990 WP_003091163.1 2151469..2152104(+) (exbB) [Pseudomonas aeruginosa strain NY7770]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81